Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g1076 ATGGACGCTCTCGAGTCGAACCCTAATCCTCCTCCTTTCCTTCCGTCCGAAACTGTGGCTTCGTACGATCATGACCCTACTCCCCCGCCGCCTGACAACTTTACATCAGATTTCCAGAAGCCATATGAGCAAACTGCGAATTTCGATTATCAAAATTCTTCGAAAACCCTAGCTTCGGATGGCCAAAACGTTAACGGTCAGCCCCAATCTGCTACTAGGAATGGCCACGAGAACGGACTCGATAACAGTCATGGCGGTGCCGATAGCAATAGCAATTCGAAGCCTTTGAGTGTGAGGCCGTTGATTTCTGAAAACGCTGGGACCAACAATACCCAGAGTGGCACCGACAAGGATCACTCTGGTGGGGAAGAGGAAACTACAAGCAAACGTCGCCGCCGTAGTCGATGGGACCCGCAACCTGATTCCAATGACCAGAGTGGCGGTGAAGCCGGTGGCGGAGCGAAGAAGAGGAAATCACGTTGGGCTGATGATGAGCCGAAGCCGGTGATTCAGCTTCCGGATTTCATGGGCGGTATTGAGTTTGATCCTGAAATTCAAGCTTTGAATAGTAGGCTTCTTGAGATTAGTCGAATGCTGCAATCAGGTCTGCCTCTTGATGATCGCCCTGAAGGTGCTAGATCTCCTTCACCTGAACCTATATATGATAACATGGGAATTAGAATTAACACTAGAGAATATCGTGCCCGTGAAAGATTGCAAAAGGAGAGGCAAGAAATCATTTCTCAGATTATCAAGAAAAACCCCGCGTTCAAGCCACCCGCAGATTATAGGCCACCGAAGCTTCATAAGAAGCTGTATATACCAATGAAAGAATATCCCGGTTACAACTTTATAGGGCTTATTATTGGTCCTCGAGGCAACACACAGAAGCGGATGGAAAGAGAAACTGGTGCTAAAATTGTGATTCGAGGTAAAGGGTCAGTGAAAGAGGGTAGACTGCAACAGAAGAGGGATTTGAAACCTGACCCTTCAGAGAATGAAGATTTGCATGTCCTTGTGGAGGCAGAAACACAAGAATCACTTGATGCTGCCGCAGGTATGGTGGAGAAGCTCTTGCAGCCTGTGGATGAGGTGTTGAATGAGCACAAGAGGCAGCAGCTTAGGGAACTTGCGGCCTTGAATGGTACAATTAGGGATGAAGAATATTGCCGGCTGTGTGGTGAACCTGGACATCGCCAATATGCATGTCCTACGCGTACTTCTACATTTAAGAGTGAAGTGGTCTGTAAGCACTGTGGGGATGGTGGTCACCCAAGCATAGATTGTCCAGTGAAGGGAGCAACTGGCAAGAAGATGGATGACGAGTATCAGAACTTCTTGGCAGAGCTGGGAGGGACAGTTCCAGAGTCAGCAATAAAGCAGAACCCCACGTTGGCAATTGGGTCAGGCAATTCTGGAAGCAATCCTCCTTGGGCTAACAATTCTGGATCGACTGGTGGTACATCAACGCCTGGCTTAGGGTCTAATCCGGTTAAAAAGGAAATTGATGATACAAATTTGTATATTGGGTATTTACCACCCACCCTTGATGATGATGGTCTGATCCAATTGTTTCAACAATTTGGTGAGATCGTTATGGCAAAGGTTATAAAAGACCGGATGACTGGTTTGAGTAAAGGATATGGCTTTGTCAAATATGCAGATGTCCAAATGGCGAATAATGCAACTATGGCCATGAATGGCTATCGCCTTGAGGGCAGAACCATTGCAGTGAGAGTTGCTGGTAAGCCGCCTCAGCCTACTGTGCCTCCTGGGCCGCCAGCATCAGCCATGCCCACATATCCTATTTCAAGCCAGCCAGTCGGCGCCTATCCATCCCAACAATATGCTGCTGGTGGTCCTCTTGGTGCCGCACCCCCTCCCCCTGGAAGTTATGCCGGTGCCCCAGTTCCATGGGGACCTCCTGTTCCTCCACCGTATGCTCCTTATGCTCCTCCCCCTCCTGGATCAACTATGTACCCTCCCCCTCCTCCATATGGTGTTCAGTATCCTCCAGTCCAGACGGCCCCTCCAGGTGCCCCATCCCAGCCTGCAACTTCTAGTGAATCACAGCAGAGTTTCCCTCCAGGGGTGCAGTCTGACAGTAGTACCTCTACTCAATCTACATCGGCCAACATTTATGGGAGTTCAATGCCACAAGCTGCTCAACCTACATATGCATCTTATGGTTACCCACCTTACTATGGTGCAGTTCCCCCTCCACCATCCCCACCTGCCCCTGCACCGATCCCGACTTCAGACCATATGCACTGGGCTACCAATCCTTCAGTGCCACATCCTGCAGAGAAGACAACATACGGTGCAGATCAATCTCAGAGCATAGGAAATATTCAGAGTATGAGAAGTTCATGGCAGAGATGA 2382 0.4924 MDALESNPNPPPFLPSETVASYDHDPTPPPPDNFTSDFQKPYEQTANFDYQNSSKTLASDGQNVNGQPQSATRNGHENGLDNSHGGADSNSNSKPLSVRPLISENAGTNNTQSGTDKDHSGGEEETTSKRRRRSRWDPQPDSNDQSGGEAGGGAKKRKSRWADDEPKPVIQLPDFMGGIEFDPEIQALNSRLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNMGIRINTREYRARERLQKERQEIISQIIKKNPAFKPPADYRPPKLHKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQESLDAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGTVPESAIKQNPTLAIGSGNSGSNPPWANNSGSTGGTSTPGLGSNPVKKEIDDTNLYIGYLPPTLDDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADVQMANNATMAMNGYRLEGRTIAVRVAGKPPQPTVPPGPPASAMPTYPISSQPVGAYPSQQYAAGGPLGAAPPPPGSYAGAPVPWGPPVPPPYAPYAPPPPGSTMYPPPPPYGVQYPPVQTAPPGAPSQPATSSESQQSFPPGVQSDSSTSTQSTSANIYGSSMPQAAQPTYASYGYPPYYGAVPPPPSPPAPAPIPTSDHMHWATNPSVPHPAEKTTYGADQSQSIGNIQSMRSSWQR 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g1076 793 MobiDBLite consensus disorder prediction 772 793 - -
Lele29g1076 793 FunFam splicing factor-like protein 1 260 388 - -
Lele29g1076 793 CDD SF1_like-KH 269 385 - -
Lele29g1076 793 MobiDBLite consensus disorder prediction 463 495 - -
Lele29g1076 793 Gene3D - 479 588 IPR012677 -
Lele29g1076 793 MobiDBLite consensus disorder prediction 662 679 - -
Lele29g1076 793 MobiDBLite consensus disorder prediction 680 718 - -
Lele29g1076 793 MobiDBLite consensus disorder prediction 117 139 - -
Lele29g1076 793 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 268 394 IPR036612 GO:0003723
Lele29g1076 793 MobiDBLite consensus disorder prediction 734 751 - -
Lele29g1076 793 Gene3D - 388 441 - -
Lele29g1076 793 MobiDBLite consensus disorder prediction 662 718 - -
Lele29g1076 793 Pfam Splicing factor 1 helix-hairpin domain 157 264 IPR032570 -
Lele29g1076 793 SMART c2hcfinal6 389 405 IPR001878 GO:0003676|GO:0008270
Lele29g1076 793 SMART c2hcfinal6 415 431 IPR001878 GO:0003676|GO:0008270
Lele29g1076 793 SMART rrm1_1 506 579 IPR000504 GO:0003723
Lele29g1076 793 SUPERFAMILY RNA-binding domain, RBD 501 595 IPR035979 GO:0003676
Lele29g1076 793 MobiDBLite consensus disorder prediction 584 600 - -
Lele29g1076 793 Gene3D - 182 260 - -
Lele29g1076 793 SUPERFAMILY Retrovirus zinc finger-like domains 386 432 IPR036875 GO:0003676|GO:0008270
Lele29g1076 793 FunFam splicing factor-like protein 1 485 587 - -
Lele29g1076 793 Pfam KH domain 283 331 IPR004088 GO:0003723
Lele29g1076 793 MobiDBLite consensus disorder prediction 37 116 - -
Lele29g1076 793 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 505 583 IPR000504 GO:0003723
Lele29g1076 793 MobiDBLite consensus disorder prediction 1 171 - -
Lele29g1076 793 MobiDBLite consensus disorder prediction 202 223 - -
Lele29g1076 793 MobiDBLite consensus disorder prediction 581 603 - -
Lele29g1076 793 PANTHER RNA-BINDING PROTEIN RELATED 121 634 IPR045071 -
Lele29g1076 793 Gene3D K Homology domain, type 1 265 387 IPR036612 GO:0003723
Lele29g1076 793 SMART kh_6 268 360 IPR004087 GO:0003676
Lele29g1076 793 MobiDBLite consensus disorder prediction 151 167 - -
Lele29g1076 793 MobiDBLite consensus disorder prediction 313 333 - -
Lele29g1076 793 ProSiteProfiles Type-1 KH domain profile. 283 355 - -
Lele29g1076 793 ProSiteProfiles Zinc finger CCHC-type profile. 416 430 IPR001878 GO:0003676|GO:0008270
Lele29g1076 793 ProSiteProfiles Zinc finger CCHC-type profile. 390 404 IPR001878 GO:0003676|GO:0008270
Lele29g1076 793 MobiDBLite consensus disorder prediction 463 498 - -
Lele29g1076 793 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 507 576 IPR000504 GO:0003723
Lele29g1076 793 FunFam splicing factor 1 388 441 - -
Lele29g1076 793 MobiDBLite consensus disorder prediction 732 793 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g1076 Lele-ChrLele29 8320434 8322885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g1076 506 668 Eukaryotic Initiation Factors Gene Family AT1G34140 31.792 1.79e-11 65.1