Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g1053 ATGGCCCGACATGAAATTTTTATATTCTTTCTCCTTCTTCCTACTTGCTTAGTTCTTTTGTCGCTATGCTCCATCGCTTCAGGACTCACAGAAACTGAAGCTCTTCTGAAGTGGAAACAGAGTCTCCCAAACCAACCAATTTTGGATTCATGGGTTTCTCCACCACAAGCTAATAACTCTAGTGGATCAGATCAAACCCCATGTTCATGGAGTGGAATTATCTGTGATTCTTCAGGGAGTGTGATTGAACTGAACTTGAACAATACTGGTCTTCAAGGTACCATAGAAAACTTGAACTTCTCAGCATTAGCAAATCTTCTTATTCTTAATCTTCAATATAACAAACTCAGTGGCAGTATCCCAGAAAGCATTGGAGTTCTCTCAAAGCTTCAATTTCTATCTCTAGATGGAAACAACTTTTCTGGGTCTATACCACAATCTCTAGGTAACTGTACAAATATAAGTGTTCTCTCAGTGGCTTTAAACAATCTCTCAGGCATAATTCCACCTAGTATTGGTACATTGAACAATCTAACTGTTGTTCGCTTTCATCGAAACCATTTACATGGTGATTTGCCACAAGAGTTTGGGAATGTTTCATCTTTGATTGTTGTTCATCTATCTTATAACAACTTCAGTGGCCATTTACCACCTCAGGCATTACAGTTAGATTGGCCTAAGAGGGTGGATATTGTCAAAGGCGTGGCATATGCTCTGTCTTATATGCATCATGATTGTGACCCACCAATTATTCATAGAGACATATCAAGCAAAAATATATTATTGTCTGCAAATCTTGAAGCCCATATCTCAGATTTTGGCACAGCAAGGTTCTCGAAGGCTAACTCATCAATTTGGACAACATTTGCTGGCACACATGGCTATGCTGCTCCAGAGCAAGCATATACAATGGCAGTGTCTGAGAAATGTGATGTGTTTAGCTTTGGTGTATTGGCATTTGAGATTATCATGGGGAAGCATCCTAGTGATCTAATTTCTCATGTACAATCCAATATTGATGTTCTAAACATGAACTTCAATGAGATTTTAGACCGACGTCTATCACCTCCTAAAGAGCAGCTAAAGTTGATGAAGGAAGTGGTTTTGATTGCAAATCTTGCTATTTCTTGTTTACAAACCAACCCTTCATCTAGACCAACCATGCGCAGCATCACTCATCAAATGGCTCAAATGGATATTGCTCATCATTGA 1212 0.3894 MARHEIFIFFLLLPTCLVLLSLCSIASGLTETEALLKWKQSLPNQPILDSWVSPPQANNSSGSDQTPCSWSGIICDSSGSVIELNLNNTGLQGTIENLNFSALANLLILNLQYNKLSGSIPESIGVLSKLQFLSLDGNNFSGSIPQSLGNCTNISVLSVALNNLSGIIPPSIGTLNNLTVVRFHRNHLHGDLPQEFGNVSSLIVVHLSYNNFSGHLPPQALQLDWPKRVDIVKGVAYALSYMHHDCDPPIIHRDISSKNILLSANLEAHISDFGTARFSKANSSIWTTFAGTHGYAAPEQAYTMAVSEKCDVFSFGVLAFEIIMGKHPSDLISHVQSNIDVLNMNFNEILDRRLSPPKEQLKLMKEVVLIANLAISCLQTNPSSRPTMRSITHQMAQMDIAHH 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g1053 403 ProSitePatterns Tyrosine protein kinases specific active-site signature. 250 262 IPR008266 GO:0004672|GO:0006468
Lele29g1053 403 SUPERFAMILY L domain-like 56 228 - -
Lele29g1053 403 FunFam Nuclear pore complex protein NUP107 29 188 - -
Lele29g1053 403 ProSiteProfiles Protein kinase domain profile. 130 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele29g1053 403 FunFam Leucine-rich repeat receptor-like protein kinase 214 402 - -
Lele29g1053 403 Gene3D Ribonuclease Inhibitor 29 194 IPR032675 -
Lele29g1053 403 Pfam Leucine rich repeat N-terminal domain 31 76 IPR013210 -
Lele29g1053 403 Pfam Protein kinase domain 228 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele29g1053 403 PANTHER LEUCINE RICH REPEAT KINASE 2 219 397 - -
Lele29g1053 403 SUPERFAMILY Protein kinase-like (PK-like) 180 394 IPR011009 -
Lele29g1053 403 Gene3D Transferase(Phosphotransferase) domain 1 210 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g1053 Lele-ChrLele29 7947237 7950368 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g1053 210 399 Receptor kinase-like Gene Family AT1G72180 38.693 5.36e-40 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lele29g1053 Pkinase 6.7e-27 CL0016