Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g1006 ATGTCAGCCAACACCTATCCAAGTACAAGGCCTTTCACAGGATCGGGGAAAACTCTAGTCTTTGTTTTGCCCATTGTTCCAGGAGAAGGTCCATTTGGTTTGATTGTTTGCCCATCAAGGGAACTAGCTAGACAGACTTATGAAGTAGTCGAACAATTCTTAATACCTCTGAGAGAAGCTGGATATCCTGAGCTCAGGCCATTGCTTTGTATTGGTGGGGTAGATATGAGGTCACAGCTAGAAGTTGTGAAGAAGGGTGTTCATATTGTTATTGCAACTCCTGCGGAAGCAGTGGCTATTCATGGAGGCAAAGATCAGGAAGAGAGAGAGTATGCCATTGCAGCCTTTCAGGCTGGAAAGAAAGATGTGTTGGTTGCAACTGATGTTGCATCCAGGGGATTGGATTTTCCTGATATTCAGCATGTTATTAACTATGACATGCCTGCTGATATTGAGAACTACGCTCATAGGATTGGACGAACCGGACGATGTGGCAAGACCGGCATAGCTACGACGTTCACTAACAAGAATCAAACCGAGACAACCTTGCTTGACTTGAAACATCTGTTGCAAGAAGCAAAACAGCGTATTCCCCCAGTTTTAGCAGAGCTTAATGATCCGGTGGAATATAACGAGGAAATCACTGATAATAGTGGGGTCAACGGCTGTACGTATTGTAACGGGCTCGGTCATCGCATTCGGGATTGCCCTAAATTGGAACATCTGAAGAGCATGGCAATTGCAAATAACAGGAGGGATTATTTTGGTTCTGGTGGATACAGAGGAGAAATATGA 795 0.4453 MSANTYPSTRPFTGSGKTLVFVLPIVPGEGPFGLIVCPSRELARQTYEVVEQFLIPLREAGYPELRPLLCIGGVDMRSQLEVVKKGVHIVIATPAEAVAIHGGKDQEEREYAIAAFQAGKKDVLVATDVASRGLDFPDIQHVINYDMPADIENYAHRIGRTGRCGKTGIATTFTNKNQTETTLLDLKHLLQEAKQRIPPVLAELNDPVEYNEEITDNSGVNGCTYCNGLGHRIRDCPKLEHLKSMAIANNRRDYFGSGGYRGEI 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g1006 264 CDD SF2_C_DEAD 96 173 - -
Lele29g1006 264 Gene3D - 28 221 IPR027417 -
Lele29g1006 264 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 197 IPR027417 -
Lele29g1006 264 SMART c2hcfinal6 222 238 IPR001878 GO:0003676|GO:0008270
Lele29g1006 264 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 49 205 IPR001650 -
Lele29g1006 264 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 13 95 - -
Lele29g1006 264 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 13 193 IPR014001 -
Lele29g1006 264 Coils Coil 176 196 - -
Lele29g1006 264 SUPERFAMILY Retrovirus zinc finger-like domains 221 242 IPR036875 GO:0003676|GO:0008270
Lele29g1006 264 Pfam Helicase conserved C-terminal domain 96 165 IPR001650 -
Lele29g1006 264 ProSiteProfiles Zinc finger CCHC-type profile. 223 238 IPR001878 GO:0003676|GO:0008270
Lele29g1006 264 SMART helicmild6 81 165 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g1006 Lele-ChrLele29 7462257 7464069 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g1006 99 204 Eukaryotic Initiation Factors Gene Family AT1G72730 36.792 2.92e-19 84.7