Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g1003 ATGTTTCTGCATAGAAACTCCATAGCTCTGTTGGTGATTCCCATTATAGCTGTTTTTGCATATCTCATTGTCGTACATGAGACTAATGGAAACGAGCAGTTGTTTCTGGGTGATTTATTGTCCTCGTTCTCTTTAAATAGTGGTCATCACCGTCGTCGTCATCATCATCATTCCCACAAGAAACGACCTGATAGCAGCAGCAGTAGCAATATATGTGATGATTTTCCGCCGGGAATTCCGCCGCCGAACTCCAACACGACGACGTATCTATGTGTGGATCGACGAGGTTGCTGCAATTTCACAACCGTGCAAGCAGCTGTGAATGCTGTCCCAGATTTCAGTGATAGGAGAAACATTATATGGATTAACAGTGGCCTTTATTATGAGAAAGTGATGGTGCCAAAGAGCAAACCAAACATCACATTTCAAGGGCAAGGCTACACTTCAACGGCCATTGCTTGGAACGACACCGCCAAGTCAGCAAACGGCACATTCTATAGTGGCTCCGTACAAGTCTTCGCCTCCAACTTCATTGCCAAAAACATAAGCTTCATGAATGTGGCGCCAATTCCAGGTCCTGGGGTAGAAGGAGCACAAGCAGTAGCCATGAGAATAGGGGGTGATAAGGCTCAATTCTGGGGATGTGGCTTTTTTGGAGCACAAGATACTCTTCATGATGATAGCGGTCGCCATTACTTTAGGGATTGCTATATTCAAGGCTCCATTGATTTCATTTTTGGTGATGCAAGGTCTCTCTATGAGAATTGTCAACTGGTGTCAATGGCGAACCCAGTACCGCCGGGACAAAAGTTCATAAACGGCGCCGTTACAGCTCATGGGAGGTCATCAAACGACGAAAACACAGGCTTTGCTTTTGTAAACTGTAGCATTGGCGGTTACGGAAGAATATGGTTAGGTCGGGCATGGCGTCCTTACTCTCGTGTCGTTTTTGCCTATACGACAATGTCCGATATCATCGCCCCTGAAGGTTGGAATGACTTCAAGGACCCTGCCAGAGATCAGACAGTATTCTATGGAGAATACAACTGCAGAGGGCCAGGGGCTAACATGAATATGAGGGCACCATATGTACAGATATTAAACGATACAATTGCTTCTCCTTTCCTCAACACATCATTCATTGATGGAGACCAATGGTTTTTCCCTTCCAAATAA 1176 0.4532 MFLHRNSIALLVIPIIAVFAYLIVVHETNGNEQLFLGDLLSSFSLNSGHHRRRHHHHSHKKRPDSSSSSNICDDFPPGIPPPNSNTTTYLCVDRRGCCNFTTVQAAVNAVPDFSDRRNIIWINSGLYYEKVMVPKSKPNITFQGQGYTSTAIAWNDTAKSANGTFYSGSVQVFASNFIAKNISFMNVAPIPGPGVEGAQAVAMRIGGDKAQFWGCGFFGAQDTLHDDSGRHYFRDCYIQGSIDFIFGDARSLYENCQLVSMANPVPPGQKFINGAVTAHGRSSNDENTGFAFVNCSIGGYGRIWLGRAWRPYSRVVFAYTTMSDIIAPEGWNDFKDPARDQTVFYGEYNCRGPGANMNMRAPYVQILNDTIASPFLNTSFIDGDQWFFPSK 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g1003 391 ProSitePatterns Pectinesterase signature 2. 238 247 IPR033131 -
Lele29g1003 391 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 78 387 - -
Lele29g1003 391 Pfam Pectinesterase 92 384 IPR000070 GO:0030599|GO:0042545
Lele29g1003 391 MobiDBLite consensus disorder prediction 50 79 - -
Lele29g1003 391 Gene3D - 83 390 IPR012334 -
Lele29g1003 391 SUPERFAMILY Pectin lyase-like 88 389 IPR011050 -
Lele29g1003 391 FunFam Pectinesterase 84 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g1003 Lele-ChrLele29 7447044 7449634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g1003 61 387 Carbohydrate Esterase AT1G05310 71.865 0.0 520