LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele29g1001	ATGGAAGAAGGCAATTCCAGCACACAAGGATGTGTCATGGATTCTCCGGCTCCGGCATCGTCTTACCGGGGAGTTCGCAAGCGAAAATGGGGCAAATGGGTGTCGGAAATCCGTGAGCCGGGCAAGAAAACTCGGATATGGTTAGGAAGCTATGAGACGCCGGAAATGGCGGCGGCAGCGTATGACGTCGCGGCTTATCACTTCCGAGGACAGTCTGCGAGGCTTAACTTCCCGGAGTTTGGCGAAGTGTTTCCACGACCGGCGAGCTCCCAAGCGGAGGACGTACAGTCTGCGGCTCAACAAGCGGCATTGATGATGAGGAGACCGTTGAGAACAAGGGAGGCTACCGAAGACGTCGTAGCTCCTCTGGCAACAACGACGGGGGGCCTGTCACCGAGCCAGATTCAGGCGATCAATGAGTGCCCATTGGATTCGCCAAAGATGTGGATGCAAATGTCAGGGTTTGATGAGTCAATGGCATTATATAATAATCAGGATGATGAAGAAGATGATTTGGAATTCACAAGTTGGGAACAAATACAAGATGATTCTATATGGGATTTCTCATTTAAATAA	576	0.5087	MEEGNSSTQGCVMDSPAPASSYRGVRKRKWGKWVSEIREPGKKTRIWLGSYETPEMAAAAYDVAAYHFRGQSARLNFPEFGEVFPRPASSQAEDVQSAAQQAALMMRRPLRTREATEDVVAPLATTTGGLSPSQIQAINECPLDSPKMWMQMSGFDESMALYNNQDDEEDDLEFTSWEQIQDDSIWDFSFK	191

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele29g1001	191	SUPERFAMILY	DNA-binding domain	20	78	IPR016177	GO:0003677
	Lele29g1001	191	FunFam	Ethylene-responsive transcription factor 2	20	79	-	-
	Lele29g1001	191	ProSiteProfiles	AP2/ERF domain profile.	21	78	IPR001471	GO:0003700\|GO:0006355
	Lele29g1001	191	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED	19	148	-	-
	Lele29g1001	191	Pfam	AP2 domain	21	70	IPR001471	GO:0003700\|GO:0006355
	Lele29g1001	191	Gene3D	AP2/ERF domain	21	79	IPR036955	GO:0003700\|GO:0006355
	Lele29g1001	191	CDD	AP2	20	79	IPR001471	GO:0003700\|GO:0006355
	Lele29g1001	191	MobiDBLite	consensus disorder prediction	1	22	-	-
	Lele29g1001	191	SMART	rav1_2	21	83	IPR001471	GO:0003700\|GO:0006355
	Lele29g1001	191	MobiDBLite	consensus disorder prediction	1	15	-	-
	Lele29g1001	191	PRINTS	Ethylene responsive element binding protein signature	60	80	IPR001471	GO:0003700\|GO:0006355
	Lele29g1001	191	PRINTS	Ethylene responsive element binding protein signature	22	33	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele29g1001	Lele-ChrLele29	7437714	7438289	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele29g1001	14	187	AP2-EREBP Transcription Factor Family	AT1G71450	51.381	9.62e-54	167

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Lele29g1001		AP2	2.6e-13	CL0081