Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g1000 ATGGAAGAAGAAGCCAACTGCAACGCACAAGGATGTGGCATGGCTCCTCCGGCTCCAGCTTCGTCGTCTTACCGGGGAGCTCGAAAGCGAAAATGGGGCAAATGGGTGTCGGAAATCCGTGAGCCCGGCAAGAAAACTCGGATATGGTTAGGAAGCTACGAAGCACCAGAAATGGCGGCAGCGGCGTATGATGTTGCAGCGTCACACTTCCGAGGACCGTCGGCACGACTCAACTTCCCGGAGTTCTTAGGAGCTCTTCCACGGCCGGCGAGCTCTCAAGTGGAGGATGTCCGGTTCGCAGCTCAACAAGCGGCATTAATGTTCAGAAGACGACCATTAAGATCATTTCAATCACCAAGTGATGAGGCCCAAGGCGGCGTCATGGTTCCGGCGGCCACCGAGGGGCTGTTTCCGGCGATCCAGATTGATGCCATAAATGAGTCACCATTGGATGATTCCCCAAAGATGTGGATGCAAATGGTTGAAGCTTTCTTATTAGGGTTTGATGAGTCTATAGGATTATATAACGATGACGACGAGGGCGATTTGGAACTGAGAAGATGGGAAGAAATACTGAATGATCCAATGTGGGATTTCTAA 600 0.515 MEEEANCNAQGCGMAPPAPASSSYRGARKRKWGKWVSEIREPGKKTRIWLGSYEAPEMAAAAYDVAASHFRGPSARLNFPEFLGALPRPASSQVEDVRFAAQQAALMFRRRPLRSFQSPSDEAQGGVMVPAATEGLFPAIQIDAINESPLDDSPKMWMQMVEAFLLGFDESIGLYNDDDEGDLELRRWEEILNDPMWDF 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g1000 199 Gene3D AP2/ERF domain 23 81 IPR036955 GO:0003700|GO:0006355
Lele29g1000 199 Pfam AP2 domain 23 72 IPR001471 GO:0003700|GO:0006355
Lele29g1000 199 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 21 118 - -
Lele29g1000 199 SMART rav1_2 23 86 IPR001471 GO:0003700|GO:0006355
Lele29g1000 199 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700|GO:0006355
Lele29g1000 199 CDD AP2 22 81 IPR001471 GO:0003700|GO:0006355
Lele29g1000 199 MobiDBLite consensus disorder prediction 1 25 - -
Lele29g1000 199 PRINTS Ethylene responsive element binding protein signature 62 82 IPR001471 GO:0003700|GO:0006355
Lele29g1000 199 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Lele29g1000 199 SUPERFAMILY DNA-binding domain 22 80 IPR016177 GO:0003677
Lele29g1000 199 FunFam Ethylene-responsive transcription factor 2 22 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g1000 Lele-ChrLele29 7434425 7435024 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g1000 9 198 AP2-EREBP Transcription Factor Family AT1G71450 43.684 1.80e-42 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele29g1000 AP2 3.6e-10 CL0081