Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0982 ATGATGAGGCTTCAGACATATGCGGGGCTTAGTTTGATAGCAACGCTAGCTGTTACATATCATGCATTCAGCAGCAGAGGTCAATTTTATCCAGCAATGGTTTTTCTGTCAACTTCCAAGATCAGCTTGGTACTTCTTCTCAACATGGGTCTGGTCATTATGTGTCTTTTATGGCAATTAACAAAGAAGGTGTTCCTTGGCACACTCCGAGAGGCTGAGGTTGAGAGGCTTAATGAGCAATCATGGAGGGAGGTTATGGAAATTCTCTTTGCCATCACCATTTTTAGGCAGGATTTCTCTGTTACATTTCTTGCTATGGTCACAGCACTGTTGTTGATCAAAGCTTTACATTGGTTGGCTCAGAAAAGAGTTGAATATATTGAGACGACTCCTACAGTGCCTTTGTTGTCTCACATTCGAATTGTGTCTTTCATGGGTTTCCTCCTCCTTCTGGATGGACTCTTCTTGTATAGTTCCTTGGACCATTTGATACAATCATGGCAGGCTTCAGTTTCCCTCTTTTTTGCTTTCGAGTACATGATACTGGCAACAACAACAGTGTCAATTTTTGTAAAATATCTTTTCTACGTTAGTGACATGCTTATGGAAGGACAGTGGGAAAAGAAACCAGTCTTCACATTCTACTTGGATCTCATTAGGGATCTGCTTCACTTGTCGATGTATATGTGTTTCTTCCTTGTCATTTTCATAAATTATGGTGTGCCTTTGCACTTAATACGGGAGCTGTATGAGACATTTAGGAACTTCAAAGTTCGTGTTGCTGACTACATTCGTTATCGCAAGATAACTTCAAATATGAATGATCGGTTTCCAGATGCAACCCCTGAAGAACTTAATGTAAGCGATGCTACATGTATTATCTGTCGTGAGGAGATGACTACAGCCAAGAAACTTATATGCGGACATCTGTTTCATGTGCATTGCCTCCGATCATGGTTGGAGCGACAACATACTTGCCCTACCTGCAGAGCCTTGGTTGTACCACCTGAAAATGGGGCAACTATTGCTGGCGGGCAGCATGGATCACAGTCAGATCGACAAGGAACAAGTACTGGAAGCTCAGCTCAAGCTGAAGTTGGCAGTGGGGTGGCTACTGATAATTTAAGTCGTCATCAAGCTAGACTCCGAGCTGCAGCTGCTGCTGCTTCAATGTACGAGAAGTCTTACGTGTACCCATCTGCAACTTCGTCAGTATGCGCCCCTGGATACACTGTTTATCCTCCTGTTCAAAGACCCACTGCTGAATATAACGCTGAACTTAATGTAGAACACACTTCAAGGGAACAAACACGACGACGGTTTGTCATCCCTGGTGGTCCAATGAATGTTTCCTTTCATCCGATGGGACCGTTTCCTTTTCCTCCTTCTCTAACACATGTAGCAAATGGGAATGGGAATTATGGAGGGGGATCTGGATCTGATCCAAATATTCCAAACTCTCTGCTCGAACTCGAAGCACAAAGAATTCACCACCAGATTGAGATTCTGCAAAATCAGCTCCAGATTCTGCAGAAGGCAAGCGTTGAGGAAAATGCAAATGAGTGCAAGTCATCAACAAGTAGCAAAGACAAGCAGGTTGCTTCCTCTTCTTCTTCGTAA 1620 0.4333 MMRLQTYAGLSLIATLAVTYHAFSSRGQFYPAMVFLSTSKISLVLLLNMGLVIMCLLWQLTKKVFLGTLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLAQKRVEYIETTPTVPLLSHIRIVSFMGFLLLLDGLFLYSSLDHLIQSWQASVSLFFAFEYMILATTTVSIFVKYLFYVSDMLMEGQWEKKPVFTFYLDLIRDLLHLSMYMCFFLVIFINYGVPLHLIRELYETFRNFKVRVADYIRYRKITSNMNDRFPDATPEELNVSDATCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGATIAGGQHGSQSDRQGTSTGSSAQAEVGSGVATDNLSRHQARLRAAAAAASMYEKSYVYPSATSSVCAPGYTVYPPVQRPTAEYNAELNVEHTSREQTRRRFVIPGGPMNVSFHPMGPFPFPPSLTHVANGNGNYGGGSGSDPNIPNSLLELEAQRIHHQIEILQNQLQILQKASVEENANECKSSTSSKDKQVASSSSS 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0982 539 FunFam ERAD-associated E3 ubiquitin-protein ligase HRD1A 264 339 - -
Lele29g0982 539 Pfam Ring finger domain 291 330 IPR001841 -
Lele29g0982 539 Coils Coil 486 520 - -
Lele29g0982 539 MobiDBLite consensus disorder prediction 516 539 - -
Lele29g0982 539 MobiDBLite consensus disorder prediction 343 373 - -
Lele29g0982 539 MobiDBLite consensus disorder prediction 340 373 - -
Lele29g0982 539 ProSiteProfiles Zinc finger RING-type profile. 292 330 IPR001841 -
Lele29g0982 539 CDD RING-H2_synoviolin 289 330 - -
Lele29g0982 539 PANTHER RING ZINC FINGER PROTEIN 1 517 - -
Lele29g0982 539 SMART ring_2 292 329 IPR001841 -
Lele29g0982 539 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 337 IPR013083 -
Lele29g0982 539 SUPERFAMILY RING/U-box 272 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0982 Lele-ChrLele29 7222470 7228206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0982 1 439 C3H Transcription Factor Family AT3G16090 72.185 0.0 656