Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0963 ATGAGAGCAATTTCAAGTTCGTTGCCGTACCTGAAGCGATTTCCTTGTTCGTCCTGTTTCACATATCTTGCATCCACACATAGTTCGTCTGTAAATTCTTCGTTACTTCTCGATGATTTCACCAATTTTAGCTACAATAGAGACCTTCCCAGAGCCATGCGAGCCTTGGAAGCCATGGAAAGGCACAATGTGTGGGCAAACGCGATCACTTATTCTGAGCTTGTTAAGTGTTGCTTGGCTAGGGGGCTATCAATGAATAGGATGGAGTCTGATGTGTTTGTCCAGAGTGCTCTTATTGATATTTACTCGAAATTGGGTGAGCTGCAAGAAGCATTGAATGTTTTTAATGAGATGGTGACTGGAGACTCAGTTGTTTGGAACTCCATCATTGGGGCTTTTGCTCAGCACAGTGATGGAGATGAAGCGTTAATTAGGACAGCAAGTTCATGTTCATGTGCTGAGTTTGACCAGGATCTGATCCTCAACAATGCACTTTTGGATATGTACTGTAAATGCGGTGGTTTGGAAGATGCAAAGTCAATTTTTAATCTGATGATTGAGAAGGATGTAATTTCCTGGAGTACCATGATTGTTGCGTTAGCCCAAAATGGTTGTAGCATAGAGGCACTTACTTTATTTGAGCACATGGAAACCTCTGGTCCAAAACCAAACTATATCACACTTGTTGGGGTTCTGTTCGCATGTAGTCATGCAGGGCTTGTAAATGAAGGTTTGCACTACTTTCATTCTATGAAGGACCTTTATGGGATTGATCCTGGAAGAGAGCATTATGGTTGCATGCTCGATCTTCTCGGGAGAGCTGGGAAACTCAATGACGCGGTTAAATTAATCAATGAAATGAATTGCAAACTAGATGTTGTGATGTGGAGGACTTTGCTTGATGTATGCAGTGTCCATCAGAATGTGGATTTAGCCAAATTAGCTGCCAAAGAAATCCTAAAACTGGATCCACAAGATACAAGAGCCTATGTACTTTTATCTAATATCTGTGCAAATTCAAAAAGGTGGGATGATGTTGCAGAAGTTAGGAGGAAAATGAGAATAAAAGGTATGAGGAAAGAACCTGGATGTAGCTGGATTGATGCCAATAAGAAGATACATGCTTTTACTTTGGGAGGTAAATCACACCCTCAGACAAATGAGATCAATAGAAAGTTGGATGAGCTTATTTCTAGACTTATTAGTGTTGGTTATGTTCCTGACACAAATTTTGTGTTGCAAGATCTTGAAGAAGAACAGGGAGAAAATTCCCTTAGATACCACAGTGAGAAATTGGCAATTGTCTTTGGTATCATGAACTATCCCAGAATGATGGACGGAGTTCATGGTGGTGCGGCGGCAAATGTGAATTCTCCGCCGCCATTCCTCAGCAAGACCTATGACATGGTGGACGACCCTTCTACAAACTCGGTGGTCTCATGGAGTGATAGTAACAACAGTTTTGTTGTTTGGGATGTGCCCGAATTTGCTAGGGACATCTTGCCCAAGTCAGCTTACACCTTCAAGGGAAACATGCAATGTGATGGTAACAGGATAACAGATAGATTTGGTGTACATGGATCTGTTGCTGGGCACTCTAATATAGATGTTCAATTACGACAATCATCCAGTGCTAACCAACAGATTTTAACTCAAATGGTTGACCCAGACCGCTGGGAATTCGCAAATGAAGGATTTTTAAAGGGTCAGAAACAACTTTTGAAGAGTATCAGTAGGAGGAAATCTGCTCAAGTGAATGGTAATCAACAGCCATCTCCTGCACAGACTAAACCTGTTGCGGCATGTATTGAGGTTGGGAAGTTTGGGCTTGACGAAGAGGTTGAAAGATTGAAAAGGGATAAGAATGTTCTTATGCAAGAACTTGTAAGGTTGAGACAACAGCAACAAGCAACTGATAACCAACTGCAAAGTGTTGGGCAACGTGTGCAGGTTATGGAGCAGCGTCAACAACAAATGATGTCATTTCTGGCAAAGGCCATGCAAAGCCCAGGATTCTTGGCACAGTTTGTACAGCAGCAGAGTGACAGTAACAGACATATTACTGGAGGCAATAAAAAGAGGAGACTCCACAGGCAGGAAGAAGATACATTACCCTCTGATAATATCTACAATGCTCTTGATGGACGTGTTATTAAATATCAACCTTCTATGAATGAGGCTGCAAAAGCATTATTGCGCCAGATATTGCAAATGAATGCTTCTTCAAGGAGGGAATCATCAATAAATAACCCTGATGCTTTTCTCATTAATGATGTTCCTTCTGCCATTCCGTTAGATAGTGGGAGTTCCTCTAATCGGGCTTCAGGAGTGACTCTCTCTGAGGTTCCACCTACTTCTGGCCAGTCTTATATGGCAGGCCAATCACAATTCCCTATTAATCTTGTTCCCACCAACATATCTGAAATGCATTCTTCAAGTGCTGTGTTTACTGACCCTGTTAAAGTAGCTGAATTTCCGGGATTAAATTTGCATAGCCCAGAGAATGTTTTGGGTATTGGTGAAGTCCAAGGTGTGGAGATAGAGAGCAGTTTAGTGAACCCTGAACTCACTTTTGCGGGGCACGACACTGGGAATGCAGGGGACATAGACATGATGTCAGCAGTTTTGGATGGGACACAGTCTATAGAACTAGAAGCTGATGCCTTTTCACCTGATCCGGATGGAAATTCTAAGCTCCCAAGCATTAGTGATGTTTTCTGGGAACAGTTTCTCACAGCAAGTCCACTTACAGGTGATACAGATGAAATTAGTTCTTCCTCTCTTGGAGATGGTTTGGCCAAGGAAGGGGAATCTCCATCTACAAAGGAGAATGGACAGGAAAAGTTGGATAAGATAAAACGTATGGATCATCTTACTCAACAGATGGAACTTCTTGCTTCCAACACTTCCTAA 2913 0.4209 MRAISSSLPYLKRFPCSSCFTYLASTHSSSVNSSLLLDDFTNFSYNRDLPRAMRALEAMERHNVWANAITYSELVKCCLARGLSMNRMESDVFVQSALIDIYSKLGELQEALNVFNEMVTGDSVVWNSIIGAFAQHSDGDEALIRTASSCSCAEFDQDLILNNALLDMYCKCGGLEDAKSIFNLMIEKDVISWSTMIVALAQNGCSIEALTLFEHMETSGPKPNYITLVGVLFACSHAGLVNEGLHYFHSMKDLYGIDPGREHYGCMLDLLGRAGKLNDAVKLINEMNCKLDVVMWRTLLDVCSVHQNVDLAKLAAKEILKLDPQDTRAYVLLSNICANSKRWDDVAEVRRKMRIKGMRKEPGCSWIDANKKIHAFTLGGKSHPQTNEINRKLDELISRLISVGYVPDTNFVLQDLEEEQGENSLRYHSEKLAIVFGIMNYPRMMDGVHGGAAANVNSPPPFLSKTYDMVDDPSTNSVVSWSDSNNSFVVWDVPEFARDILPKSAYTFKGNMQCDGNRITDRFGVHGSVAGHSNIDVQLRQSSSANQQILTQMVDPDRWEFANEGFLKGQKQLLKSISRRKSAQVNGNQQPSPAQTKPVAACIEVGKFGLDEEVERLKRDKNVLMQELVRLRQQQQATDNQLQSVGQRVQVMEQRQQQMMSFLAKAMQSPGFLAQFVQQQSDSNRHITGGNKKRRLHRQEEDTLPSDNIYNALDGRVIKYQPSMNEAAKALLRQILQMNASSRRESSINNPDAFLINDVPSAIPLDSGSSSNRASGVTLSEVPPTSGQSYMAGQSQFPINLVPTNISEMHSSSAVFTDPVKVAEFPGLNLHSPENVLGIGEVQGVEIESSLVNPELTFAGHDTGNAGDIDMMSAVLDGTQSIELEADAFSPDPDGNSKLPSISDVFWEQFLTASPLTGDTDEISSSSLGDGLAKEGESPSTKENGQEKLDKIKRMDHLTQQMELLASNTS 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0963 970 MobiDBLite consensus disorder prediction 684 703 - -
Lele29g0963 970 MobiDBLite consensus disorder prediction 917 948 - -
Lele29g0963 970 Pfam E motif 306 368 IPR046848 -
Lele29g0963 970 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 189 223 IPR002885 -
Lele29g0963 970 Pfam PPR repeat 191 220 IPR002885 -
Lele29g0963 970 Pfam PPR repeat 96 119 IPR002885 -
Lele29g0963 970 Pfam PPR repeat 124 143 IPR002885 -
Lele29g0963 970 Pfam PPR repeat 263 288 IPR002885 -
Lele29g0963 970 Pfam PPR repeat 163 189 IPR002885 -
Lele29g0963 970 Pfam HSF-type DNA-binding 462 580 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele29g0963 970 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 91 125 IPR002885 -
Lele29g0963 970 Gene3D - 454 581 IPR036388 -
Lele29g0963 970 SMART hsfneu3 458 580 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele29g0963 970 Coils Coil 607 634 - -
Lele29g0963 970 TIGRFAM PPR: pentatricopeptide repeat domain 96 119 IPR002885 -
Lele29g0963 970 TIGRFAM PPR: pentatricopeptide repeat domain 163 190 IPR002885 -
Lele29g0963 970 TIGRFAM PPR: pentatricopeptide repeat domain 191 224 IPR002885 -
Lele29g0963 970 TIGRFAM PPR: pentatricopeptide repeat domain 264 290 IPR002885 -
Lele29g0963 970 SUPERFAMILY TPR-like 94 348 IPR011990 GO:0005515
Lele29g0963 970 FunFam Pentatricopeptide repeat-containing protein mitochondrial 144 252 - -
Lele29g0963 970 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 158 188 IPR002885 -
Lele29g0963 970 MobiDBLite consensus disorder prediction 767 788 - -
Lele29g0963 970 FunFam Pentatricopeptide (PPR) repeat-containing protein 253 415 - -
Lele29g0963 970 SUPERFAMILY "Winged helix" DNA-binding domain 457 580 IPR036390 -
Lele29g0963 970 Gene3D Tetratricopeptide repeat domain 160 388 IPR011990 GO:0005515
Lele29g0963 970 Gene3D Tetratricopeptide repeat domain 39 145 IPR011990 GO:0005515
Lele29g0963 970 Pfam DYW family of nucleic acid deaminases 404 442 IPR032867 GO:0008270
Lele29g0963 970 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 51 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0963 Lele-ChrLele29 7048607 7057994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0963 456 967 HSF AT5G16820 48.948 1.31e-130 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lele29g0963 HSF_DNA-bind 3.7e-14 CL0123