Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0861 ATGGATCCCAATTATCATGGCTTACCTCCCCTCAAGAGATTCAGATTCATCCAACAGCAACAAGAGCTCCAGAATCAACAGCGACATCACAATCACAAAACTCAGGATGAAGGCGCCGGCGTTTCTTGCTCAACCTTACCGGCAAAGAAGCGTAAGGAATCTCGAGATACAACATTTCTTTCCGATTCTCCAGTTTCAGTTTCTGTCAGCGCTTATTCGTTACCGGCCAAGAAACGGGTATGGGCTCTTCAACCTGATTTTGCTTCCGATGTCGGTGTTTCCTCCATTGACCTCAATGTTGAATACAAACCATCGATTGAGGAAGAAGTAAAATCAGTTGATGATGAACCCAATGATGGTGAGATTCCACTTGTAGTGAACTCCCTCCATGTTGAAAATGAAAATGAAAATGAAACTGAAAATGTTGAAGATGTTGATGAGGAAGATGAGGATGGGATTGTGTGTGCTGTATGTCAAAGCACAGATGGGGATCCATCAGATCCAATTGTTCTCTGTGATGGGTGTGATCTTATGGTTCACGCCTCATGCTATGGCAATCCGCTTGTAAAGGGAATACCAGAAGGTGATTGGTTCTGTGAAAAATGCAGAGTTTCATTGTCTTCTCAAACTAAGAATGATGATGAAAACAACATTTCTTGTTGCCTCTGTACTAAAACGGAAGGGGCTATGAAACCCACTGTAGATGAACGGTGGGCTCATATTGTGTGCGCGGTTTTGGTCCCTGAGGTGTTTTTCAAGGACCCAGAAGGAAGAGAAGGGATTGATTGCTCTAAGGTTCCCAAGAAGAGGTGGTCTGAGATGTGTTATATTTGTGAATCTTCAAATGGGTGTGTCATTGTGTGTTCTGAGCTTAAGTGTCCTTTGGCTTTTCATGTCACTTGTGGGTTGAAAGAGGATCTTACCATTGAGTATCGTGAAGGGAAGAAGAATGCTACCATCGTTGCCGGTTTCTGCAAAAGCCACACTGAATTATGGAAAAAGCAACAGCTATCTGGAAAATACAGAATCGTTGCTGAAGAACACAAGTAG 1050 0.4305 MDPNYHGLPPLKRFRFIQQQQELQNQQRHHNHKTQDEGAGVSCSTLPAKKRKESRDTTFLSDSPVSVSVSAYSLPAKKRVWALQPDFASDVGVSSIDLNVEYKPSIEEEVKSVDDEPNDGEIPLVVNSLHVENENENETENVEDVDEEDEDGIVCAVCQSTDGDPSDPIVLCDGCDLMVHASCYGNPLVKGIPEGDWFCEKCRVSLSSQTKNDDENNISCCLCTKTEGAMKPTVDERWAHIVCAVLVPEVFFKDPEGREGIDCSKVPKKRWSEMCYICESSNGCVIVCSELKCPLAFHVTCGLKEDLTIEYREGKKNATIVAGFCKSHTELWKKQQLSGKYRIVAEEHK 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0861 349 MobiDBLite consensus disorder prediction 21 60 - -
Lele29g0861 349 Pfam PHD-zinc-finger like domain 219 328 - -
Lele29g0861 349 PANTHER PHD FINGER PROTEINS 65 329 - -
Lele29g0861 349 ProSiteProfiles Zinc finger PHD-type profile. 152 205 IPR019787 -
Lele29g0861 349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 213 331 IPR013083 -
Lele29g0861 349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 208 IPR013083 -
Lele29g0861 349 CDD PHD_BRPF_JADE_like 154 202 - -
Lele29g0861 349 SMART PHD_3 154 203 IPR001965 -
Lele29g0861 349 SMART PHD_3 274 329 IPR001965 -
Lele29g0861 349 Coils Coil 128 148 - -
Lele29g0861 349 ProSiteProfiles Extended PHD (ePHD) domain profile. 217 329 IPR034732 -
Lele29g0861 349 Pfam PHD-finger 154 204 IPR019787 -
Lele29g0861 349 SUPERFAMILY FYVE/PHD zinc finger 140 206 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0861 Lele-ChrLele29 5845659 5847321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0861 20 347 C2H2 Transcription Factor Family AT3G14740 55.752 2.60e-121 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele29g0861 zf-HC5HC2H_2 1.3e-28 CL0390