Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0851 ATGAAGATTCAGTGCAACGTGTGTGAGGCGGCGGAGGCGGAGGTTCTGTGCTGCGCGGACGAGGCGGCGCTATGTCGGCAATGCGACGAGAAGGTTCATGCAGCTAACAAGCTGGCTACCAAGCATCAGAGGGTTCCTCTATCTACCTCTTCTTCTCACATGCCTAAATGTGATGTTTGTCAGGAAACAGTTGGCTATTTCTTCTGTCTGGAGGACCGAGCCTTACTATGCCGAAAATGCGACGTGGCAATACACACAGCAAATTCCTATGTCTCTGCTCATCAGAGGTTTCTGCTTACTGGTGTAAGAGTGGGTCTTGAAGCTACTGAGCCTGTTGCTCCATCGTCCTATGTGAAATCAGATTCTGGGGGGAGAGTGTCAGATACAATATCTACTTCTGTCTCCAATAAGGTTCCTTCAACGCCTCAGCCATCTGAATACAACGAATTGTTACCTACTCAAGTTGGAGGAATTGAGGAGTTTCAGCCAACCAAAGTGTCTTATGGTGGTGGTTCTTCTAACTGGCCGCTTGATGATTTTTTTTGTTTCAATGAATTCAGTCAGAATTTCAATTTTATGGACAATGTCAATCAACCATCCAAGGCTGAGAGCAGTAAGCTTGGGGATTCTGATTCTTCTGTTTTAAGATCTAGTGAAGAGGAAATGGATTATGATGATCACTTGGGGTGTGTTCCAGATTCGTCTTGGACGGTTCCTCAGATCCCTTCTCCTCCTACGGCTTCGGGTTTATATTGGCCAAAAGATCCTCGATATTCATCTGCTAATAATAATGCTATGTTTGTTCCTGACATATGCTCTCCTCACATCCAACAGCCTCTTCATGCTCGGAGAAATAGTACATTATCAAAGAGGCGATGGCGGCAGTAA 888 0.4561 MKIQCNVCEAAEAEVLCCADEAALCRQCDEKVHAANKLATKHQRVPLSTSSSHMPKCDVCQETVGYFFCLEDRALLCRKCDVAIHTANSYVSAHQRFLLTGVRVGLEATEPVAPSSYVKSDSGGRVSDTISTSVSNKVPSTPQPSEYNELLPTQVGGIEEFQPTKVSYGGGSSNWPLDDFFCFNEFSQNFNFMDNVNQPSKAESSKLGDSDSSVLRSSEEEMDYDDHLGCVPDSSWTVPQIPSPPTASGLYWPKDPRYSSANNNAMFVPDICSPHIQQPLHARRNSTLSKRRWRQ 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0851 295 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 274 - -
Lele29g0851 295 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Lele29g0851 295 MobiDBLite consensus disorder prediction 117 148 - -
Lele29g0851 295 MobiDBLite consensus disorder prediction 120 148 - -
Lele29g0851 295 MobiDBLite consensus disorder prediction 199 229 - -
Lele29g0851 295 Pfam B-box zinc finger 54 94 IPR000315 GO:0008270
Lele29g0851 295 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lele29g0851 295 CDD Bbox1_BBX-like 5 47 - -
Lele29g0851 295 SMART bboxneu5 52 99 IPR000315 GO:0008270
Lele29g0851 295 SMART bboxneu5 4 47 IPR000315 GO:0008270
Lele29g0851 295 MobiDBLite consensus disorder prediction 213 228 - -
Lele29g0851 295 Gene3D Classic Zinc Finger 1 93 - -
Lele29g0851 295 CDD Bbox1_BBX-like 56 99 - -
Lele29g0851 295 FunFam B-box zinc finger protein 22 1 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0851 Lele-ChrLele29 5767520 5770056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0851 1 294 C2C2-CO-like Transcription Factor Family AT1G78600 44.910 4.73e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele29g0851 zf-B_box 5.6e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0851 29 5767520 5770056 Lele31g0679 31 14686216 14688833 hybridization
Lele29g0851 29 5767520 5770056 Lele32g0832 32 5526433 5528971 hybridization