Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0848 ATGGCGTTAGATAAACGTAGTAATTTTCTTTTTCCCAGCTTACTTTTGTGCTCCCACTTAACTCCGCTCGTATTACAGCACTGTCTGCACTCAACGTTATCCCAACCATCAATTGAAGATAGCGAAGGTAAGAGGCAAAAAGGAGCGTCGATGGCTCTGCTCTGTGGTTCATCTTCAGTGTCGTTCCTTTCATCTTCGGCTAAATCTTCGTATGCTTCTTCCCACAATGGGAATGCCAAAACCGCATTCCTTGGGTTCCAATTAGCACCACCAAAGCCTTCTATAAGGACCAATTTGCGCCTCAATTCTGGGGCTAGTTCTCATGTGCGCTGCCAGGACCTCTCCATTGTCCCTCAAGATGAACGTTGGATGTTCGAGGAATCTGAAGTTAATGGCCCGGACATTTGGAACAAGACTTGGTATCCAAAAGCAGCAGATCATGTGAACACAGATAAACAATGGTACATTGTTGATGCTACAGATAAAATTCTTGGAAGACTAGCATCAACTATTGCAATTTATATCCGAGGCAAAAATTTGGCAACCTATACTCCCAGTGTGGACATGGGTGCATTTGTAATTGTGGTTAATGCAGAAAATATTGCTGTATCTGGAAAAAAGAGGACCCAAAAGCTTTATAGGAGGCATTCAGGACGACCCGGTGGTATGAAAGTAGAGACATTTGCCCAACTACAGGCAAGAATTCCAGAAAGAATTATTGAACACGCTGTTCGTGGCATGCTTCCAAAGGGGAGGCTTGGCAGACAACTGTTCAACCACCTAAAGGTTTATAAGGGCCCCGATCATCCTCATCAGGCCCAACAACCTATTGAGTTACCAATAAGGGACAAAAGAATACAAATGCAGAGATAG 873 0.4387 MALDKRSNFLFPSLLLCSHLTPLVLQHCLHSTLSQPSIEDSEGKRQKGASMALLCGSSSVSFLSSSAKSSYASSHNGNAKTAFLGFQLAPPKPSIRTNLRLNSGASSHVRCQDLSIVPQDERWMFEESEVNGPDIWNKTWYPKAADHVNTDKQWYIVDATDKILGRLASTIAIYIRGKNLATYTPSVDMGAFVIVVNAENIAVSGKKRTQKLYRRHSGRPGGMKVETFAQLQARIPERIIEHAVRGMLPKGRLGRQLFNHLKVYKGPDHPHQAQQPIELPIRDKRIQMQR 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0848 290 TIGRFAM rplM_bact: ribosomal protein uL13 148 279 IPR005823 GO:0003735|GO:0005840|GO:0006412
Lele29g0848 290 PANTHER RIBOSOMAL PROTEIN L13 140 286 IPR005822 GO:0003735|GO:0005840|GO:0006412
Lele29g0848 290 Hamap 50S ribosomal protein L13 [rplM]. 154 280 IPR005822 GO:0003735|GO:0005840|GO:0006412
Lele29g0848 290 CDD Ribosomal_L13 154 267 IPR005822 GO:0003735|GO:0005840|GO:0006412
Lele29g0848 290 Pfam Ribosomal protein L13 152 270 IPR005822 GO:0003735|GO:0005840|GO:0006412
Lele29g0848 290 Gene3D Ribosomal protein L13 143 286 IPR036899 GO:0003735|GO:0005840|GO:0006412
Lele29g0848 290 SUPERFAMILY Ribosomal protein L13 148 281 IPR036899 GO:0003735|GO:0005840|GO:0006412
Lele29g0848 290 ProSitePatterns Ribosomal protein L13 signature. 244 266 IPR023563 GO:0003735|GO:0005840|GO:0006412
Lele29g0848 290 FunFam 50S ribosomal protein L13 137 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0848 Lele-ChrLele29 5747722 5752184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0848 156 289 Cytoplasmic Ribosomal Protein Gene Family AT5G48760 30.496 3.13e-06 45.4