Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0833 ATGTCTCTGAGAAGCATTTTTCGCTCTCGGAAATTCTGTAGATCCTTCAAGGAGGTTAGGGCCATCGAGGAAGATGAGGGGAAGGGGCGGCTTTGCGGTGTTTACGACGACGTTGGTGACTCCATGGAGTCCCCGCCTTACGGACGTTCATGGGCCACTATGCTGCCGGAGCTTCTTGGGGAGATCATTCGCCGTGTTGACGCCTCCGAGGACCAGTGGCCCAACCGCCAAAACGTCGTTGCTTGCGCTGGCGTGTGCAAGAGGTGGAGGGATATCACGAAGGACATCGTGCGGTTCCCTTCCCGCGAAAGCGGCAGAATTACTTTTCCTTCTTGCCTTAAGCAGCCAGGACCACGTGATCCACCCCACCAATGTATTATAAAGAGGAATAAAAAGACTTCGACATTTCACGTATATCTTGCCCTTACTCGACCATCATTCACAGATAAAGGTAAGTTTCTCTTGGCAGCTAAGAGATATAGGCGTGCTTCTAGTATTGAATATGTACTTTCACTTGATGCTGATGACATATCGCAAGGAAGTAACGCCTATGTTGGAAAGTTAAGCTCAGATTTTCTTGGCACCAATTTCACAATCTATGATAGTCAGCCACCCCATTGTGGTGCAAGGCCATCAAATGGCAAGGCCAGCCGTCGTTTTGCCTCCAAGCAAATAAGCCCTCAAGTTCCTGCTGGTAACTTTGAGGTGGGGCAGGTATCGTACAAGTTCAACCTTTTGAAGTCAAAAGGGCCAAGGAGGATGGTTTGCTTAATGAAGTTCCCAAACCAATCATCAGGAGAAAGTTCAGACAGGAGATCTCTGGAGGTTCACAAGGCAAACAATGCCGAACAAGCTGCCTCGGAATACTCAATCTTGAAAAACAAATCTCCAAGGTGGCACGAGCATTTGCAATGCTGGTGCTTAAATTTCCATGGTCGTGTGACGGTAGCATCGGTGAAGAACTTTCAGCTGGTTGCTACGGTGGACCAAAGCCAACCAAGAGGGAAAGGAGATGAGGAAACGGTTCTTCTTCAATTCGGTAAAGTAGGGGATGATACTTTCACTATGGATTACAGGAAGCCCCTATCTGCATTTCAGGCCTTTGCAATATGCCTAACTAGCTTTGGCACTAAACTGGCTTTTGAGTTTCCTATTCGATTAGAGGAAGTTGATGTAAATGCTGTTCAGATGACGACATCTTCCATAATCAAATGGATCTTTATTGGGGCAAGAATTGAGGTCCTAGAATTGCGCTTGAATTTTGTGAAGAGGATAGACCAGCCAGATTGA 1290 0.4705 MSLRSIFRSRKFCRSFKEVRAIEEDEGKGRLCGVYDDVGDSMESPPYGRSWATMLPELLGEIIRRVDASEDQWPNRQNVVACAGVCKRWRDITKDIVRFPSRESGRITFPSCLKQPGPRDPPHQCIIKRNKKTSTFHVYLALTRPSFTDKGKFLLAAKRYRRASSIEYVLSLDADDISQGSNAYVGKLSSDFLGTNFTIYDSQPPHCGARPSNGKASRRFASKQISPQVPAGNFEVGQVSYKFNLLKSKGPRRMVCLMKFPNQSSGESSDRRSLEVHKANNAEQAASEYSILKNKSPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPRGKGDEETVLLQFGKVGDDTFTMDYRKPLSAFQAFAICLTSFGTKLAFEFPIRLEEVDVNAVQMTTSSIIKWIFIGARIEVLELRLNFVKRIDQPD 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0833 429 PANTHER TUBBY-RELATED 34 380 - -
Lele29g0833 429 MobiDBLite consensus disorder prediction 261 281 - -
Lele29g0833 429 Pfam F-box domain 56 99 IPR001810 GO:0005515
Lele29g0833 429 Pfam Tub family 113 377 IPR000007 -
Lele29g0833 429 ProSitePatterns Tub family signature 1. 310 323 IPR018066 -
Lele29g0833 429 Gene3D Tubby Protein; Chain A 108 382 IPR025659 -
Lele29g0833 429 PRINTS Tubby superfamily signature 233 260 IPR000007 -
Lele29g0833 429 PRINTS Tubby superfamily signature 310 326 IPR000007 -
Lele29g0833 429 PRINTS Tubby superfamily signature 339 358 IPR000007 -
Lele29g0833 429 PRINTS Tubby superfamily signature 168 184 IPR000007 -
Lele29g0833 429 PRINTS Tubby superfamily signature 292 309 IPR000007 -
Lele29g0833 429 PRINTS Tubby superfamily signature 360 382 IPR000007 -
Lele29g0833 429 PRINTS Tubby superfamily signature 184 208 IPR000007 -
Lele29g0833 429 SUPERFAMILY Tubby C-terminal domain-like 103 382 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0833 Lele-ChrLele29 5568370 5572718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0833 50 382 TUB Transcription Factor Family AT1G53320 75.516 0.0 519
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lele29g0833 Tub 3.3e-101 CL0395