Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0816 ATGTCTCATTCCGGGAAGCCCATTTCCGAGCTAGGACTCGATGCTCTCACCGACCGATTCCACGAGTCTTTGAGCTGTGAGGCTAACAAGCCGGATTTTCGAGAACTCGACTTGGGCTCGCCGGTTTCGCCATTGCGGACCCGTCACAGTGTACCTACTGCTACCTCCAGTGGACTCACTACTACCAGTAGTAGTTCGAGTTCATCTGGATCGGTCTCTGGACGAAACGGGTACAAACCGGTCGTAAAACGATCCGATTACGATCCTAATAATCACTCCGGCGAGCTCTCCGGCTCCGGTGAGAACAGTCCGACCGCTGCAGGGAATACCAGGAACTTCAAATCTCCTCAAGCAAGATCAGATTCCAAGACCACCCAACCGTTAATTTACTCCGGCCAAAGCTCCTCCGTTAATTCACCGCCGTCGAATTTTCTTCCCACAGGCAATATCTGTCCGTCCGGCAAGGTTCTGAAGACCGCCGCTGCGGTCAGTCGGAGCTCCAGGTCTGACGTTTTGGGTTATGGGATAGGAAATTACGGCCATGGAAGCATAATGCGGGGAGGTGCTACCTCCAAAGGAAATGCTGGAGGAATGACAGGTGGGGCCAATGCGAGGGCGAGCGGTGGTGGTGCCGTCACTGACTCAGTGAAGCGGGCGGGGGTGAGTGTGGATCCAGAAGAGTTGAAGAGAGCAGGGAACGAGCAGTACAAGAGGGGTCACTTCGCAGAGGCTCTGAGTCTATACGATCGAGCAATTTCATTATCCCCTGCTAACGCAGCATATCGGAGCAACCGTGCAGCCGCATTGACGGGTTTGGGACGGTTGTCTGAGGCTGTGAGGGAGTGTGAGGAGGCTGTGAGATTAGATCCCAATTATGGGAGGGCACATCAGCGTTTGGCTTCTCTTTTTCTACGGTTAGGGCAAGTTGAGAATGCCAGGAAACATCTCTTCTGCCCTGGGCTGCCACCTGATCCTTTTGAGTTGCAGAAATTGCAACTAGCGGAGAAGCATATCGGGAAATGTACAGATTCCCGGAAGATAGGTGATTGGAAAAGTGTGCTCAGGGAAATTGATGCTGCCATTTCTTCTGGAGCAGACTCTTGTCCTGAGCTCTTTATTTGTAGAGCAGAGGCCCTTTTGAAACTCCACCAAGTTGATGATGCTGAATCAACTCTGTTAAACAATCCCAAATTTGAATCACTTACTAACTCCTCTTCAAAGACAAGATTTTTTGGGATACTTTCTGAAGCTTATTCCTTCTTTGTGAGAGCTCAGATGGAGATGGCTCTGGGAAGGTTTGAGAATGCAGTTACAGCTGCTGAGAAAGCTGGTCAGATTGATCCCCGAAACATTGAAGTTACTGTTTTGCTAAAAAATGTAAGGATGGTGGCCAGAGCTCGAGCGCATGGCAATGATCTTTTCAAATCCGAAAGGTTCACTGAAGCTTGCTCAGCATATGGGGAAGGTTTGAGGCTGGATCCTTCAAACTCTGTTCTCTACTGCAATAGAGCAGCTTGCTGGTTTAAGCTTGGGCACTGGGAACAATCAATTGAGGATTGCAATCAAGCTTTACATTTCCAACCTAATTACACGAAAGCTCTTCTTCGTAGGGCAGCATCTAATAGCAAGTTAGAAAGGTGGGCGGAAGCTGTCAAAGATTATGAGATTTTGCGGAGAGCTCTTCCGGATGACAGTAAAGTAGCTGAAGCTCTGTTTCATGCAGTAGTGGCATTAAAGAAATCTCGTGGAGAGGAAGTTCATGATTTGAAATTTGGCGGGGAGGTGGAAGAAGTATCAGGTCTTGAGCAATTTAGAGCAGCGATAGCATTACCAGGTGTTTCTGTTGTCCACTTTGAAAGTTCATCTAACCCGCAATGCAAGCAAATCTCACCATTTATGGGTACATTATGTGGCCGCTATCCTTCTATTAACTTCCTCAAGGTGGATATTCAAGAATGCCCAACAGTTGCAACGGCTGAGAGCATTAGAATTGTACCGACGTTCAAGATCTACAAGAATGGCTGTCGTGTGAAGGAAATTGTGTGTCCTAGTCGTGACATGTTGGAACACTCTGTGAGGCATTATAGCTTTTAG 2094 0.4828 MSHSGKPISELGLDALTDRFHESLSCEANKPDFRELDLGSPVSPLRTRHSVPTATSSGLTTTSSSSSSSGSVSGRNGYKPVVKRSDYDPNNHSGELSGSGENSPTAAGNTRNFKSPQARSDSKTTQPLIYSGQSSSVNSPPSNFLPTGNICPSGKVLKTAAAVSRSSRSDVLGYGIGNYGHGSIMRGGATSKGNAGGMTGGANARASGGGAVTDSVKRAGVSVDPEELKRAGNEQYKRGHFAEALSLYDRAISLSPANAAYRSNRAAALTGLGRLSEAVRECEEAVRLDPNYGRAHQRLASLFLRLGQVENARKHLFCPGLPPDPFELQKLQLAEKHIGKCTDSRKIGDWKSVLREIDAAISSGADSCPELFICRAEALLKLHQVDDAESTLLNNPKFESLTNSSSKTRFFGILSEAYSFFVRAQMEMALGRFENAVTAAEKAGQIDPRNIEVTVLLKNVRMVARARAHGNDLFKSERFTEACSAYGEGLRLDPSNSVLYCNRAACWFKLGHWEQSIEDCNQALHFQPNYTKALLRRAASNSKLERWAEAVKDYEILRRALPDDSKVAEALFHAVVALKKSRGEEVHDLKFGGEVEEVSGLEQFRAAIALPGVSVVHFESSSNPQCKQISPFMGTLCGRYPSINFLKVDIQECPTVATAESIRIVPTFKIYKNGCRVKEIVCPSRDMLEHSVRHYSF 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0816 697 Pfam Tetratricopeptide repeat 499 530 IPR001440 GO:0005515
Lele29g0816 697 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 21 694 IPR044534 -
Lele29g0816 697 SMART tpr_5 497 530 IPR019734 GO:0005515
Lele29g0816 697 SMART tpr_5 259 292 IPR019734 GO:0005515
Lele29g0816 697 SMART tpr_5 466 496 IPR019734 GO:0005515
Lele29g0816 697 SMART tpr_5 417 450 IPR019734 GO:0005515
Lele29g0816 697 SMART tpr_5 531 564 IPR019734 GO:0005515
Lele29g0816 697 SMART tpr_5 225 258 IPR019734 GO:0005515
Lele29g0816 697 MobiDBLite consensus disorder prediction 46 75 - -
Lele29g0816 697 MobiDBLite consensus disorder prediction 91 146 - -
Lele29g0816 697 Gene3D Tetratricopeptide repeat domain 223 583 IPR011990 GO:0005515
Lele29g0816 697 ProSiteProfiles TPR repeat profile. 417 450 IPR019734 GO:0005515
Lele29g0816 697 SUPERFAMILY TPR-like 225 453 IPR011990 GO:0005515
Lele29g0816 697 FunFam TPR repeat-containing thioredoxin TTL4 589 696 - -
Lele29g0816 697 MobiDBLite consensus disorder prediction 26 146 - -
Lele29g0816 697 Pfam Thioredoxin 602 687 IPR013766 -
Lele29g0816 697 Gene3D Glutaredoxin 589 696 - -
Lele29g0816 697 CDD TRX_family 602 689 - -
Lele29g0816 697 ProSiteProfiles TPR repeat profile. 225 258 IPR019734 GO:0005515
Lele29g0816 697 Pfam Tetratricopeptide repeat 231 291 - -
Lele29g0816 697 SUPERFAMILY Thioredoxin-like 500 695 IPR036249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0816 Lele-ChrLele29 5409561 5412745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0816 462 533 U-box Gene Family AT3G07370 38.889 4.12e-09 56.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0816 29 5409561 5412745 Lele31g0715 31 14960715 14963902 hybridization
Lele29g0816 29 5409561 5412745 Lele32g0796 32 5277579 5280719 hybridization