Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0799 ATGTTAGAGCGCTGTCTGACCTGCGTGTGGATCTCACGCGCTGCTGCAGTTTCTCCTGGTTCAGTGTCTGCTTTAGGAGTTCTGCCCTCTCGTCGACTTCTGCTTCTTGGTTGTCGACTCTTTGGCTATTCGCATGTAAGCTTTAGCTCTTTGGCTCTTTGTCGTCGACTTCTGCCCTCTCCTCTCTCTAGTTATTTGTCGTTCCAAGATAATTCCGGAAGGAGTGGCATTTATGTGGATGACGTTAGAGCTTCATTCAAAAGAAAAAATGCTGAAGTTGTTAGAGGCAATTTCCCTCATTTTGATGCCTCACCTAGTTCTTCAGTAAATCCCCCAAATGCAAGACACTCTGATGGGGTTACCATGATGGATACTGCTTCATTGCCCCTCCCTCTATTCCGAGGAAATAACATCCCTTCTCCCATGGAATTAGGTCCCCATGGTAGTTTGTGGAGCAGGTCAGGTGAGCCTGTTATGATGCTTGAACATAGCCATTTGATTCAAGGTAATTATTTAGGACAGCCCTTCCAGCCAGTTGCTCCTCCTTGGTTGGATCAACAGTTGAATAACAGTCACAGTGATGGACATACTACAGCTTGGAACCAGTCTCTTCCAATGCCTTATATGCAAGGTAGAGATGCTAGTGCTTTCTCTTTTTCCAGTTTTGCATTTCCCCTTTGGAGCCTTATGGCCATTTTTACTTGGACTTTCTCACCCAATGTTAATGGAAGTTCATTAGAGAATGCAAATATGGGTTTGCAGAGATATCATGATACGGCTAGTAGTATAAATGGCCTCAGGTTTGTTCATCCACCTGTCAGCCACCAGCACCATAATTATCATAATCCGGCAATGCGAATGAGAGGATTCAGAGGCCACAATATCATTTTTCAACCTCCAGTAACTGCAGCTTCTTATAGAGTTCCAACAAATCCTTTACGCAATGCCATGAGCCCTGCACAGAATGGTTTTGAGATGGGTCATAGGCATGTTGGCCTTGTACCACCGGCAGGCCCACAAGTATATCGTCCTCATAGAGGATACATGAATGAGACAACAATTGGGCATCGAAATCTTCACCCTATGAGCTATCTCCAAGTTGATGATGTTGCAATACTGGATGAAGTGGGATTAGTTGATCATCACAGAGATTTGCGCTTGGACATAGAGGATATGTCTTATGAGGCTAGTAGTCAAAGTCAACTAGCATATTTTCCTATCGATCTTCTTGCATTGGGCGAGCGAATTGGCAATGTAAGCACCGGTTTATCAGAAGAGTCCATTTCAGCTTTAATGAAAACTAGAATTTATGCAACACCCACTATTATTAACCTGGAAGGGGAAGAAGAAACTTTAGAGGATCAGGAAGCTGATTCATGCATAATATGCCTGGATAAATATGAAAACAGACAGAAGATAGGAATTCTTCAATGCGGTCATGAGTATCATGCAGATTGCTTGAAGAAATGGCTTCTTGTGAAAAATGTCTGTCCCATATGCAAATCAGAAGCATTGACTCCTGGAAAGGACAAAGGAGTATAG 1542 0.4326 MLERCLTCVWISRAAAVSPGSVSALGVLPSRRLLLLGCRLFGYSHVSFSSLALCRRLLPSPLSSYLSFQDNSGRSGIYVDDVRASFKRKNAEVVRGNFPHFDASPSSSVNPPNARHSDGVTMMDTASLPLPLFRGNNIPSPMELGPHGSLWSRSGEPVMMLEHSHLIQGNYLGQPFQPVAPPWLDQQLNNSHSDGHTTAWNQSLPMPYMQGRDASAFSFSSFAFPLWSLMAIFTWTFSPNVNGSSLENANMGLQRYHDTASSINGLRFVHPPVSHQHHNYHNPAMRMRGFRGHNIIFQPPVTAASYRVPTNPLRNAMSPAQNGFEMGHRHVGLVPPAGPQVYRPHRGYMNETTIGHRNLHPMSYLQVDDVAILDEVGLVDHHRDLRLDIEDMSYEASSQSQLAYFPIDLLALGERIGNVSTGLSEESISALMKTRIYATPTIINLEGEEETLEDQEADSCIICLDKYENRQKIGILQCGHEYHADCLKKWLLVKNVCPICKSEALTPGKDKGV 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0799 513 Pfam Ring finger domain 458 501 IPR001841 -
Lele29g0799 513 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 82 505 IPR045191 GO:0061630
Lele29g0799 513 ProSiteProfiles Zinc finger RING-type profile. 460 501 IPR001841 -
Lele29g0799 513 SUPERFAMILY RING/U-box 459 505 - -
Lele29g0799 513 SMART ring_2 460 500 IPR001841 -
Lele29g0799 513 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 417 505 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0799 Lele-ChrLele29 5227556 5238030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0799 357 505 C3H Transcription Factor Family AT2G15530 41.060 1.76e-31 127