Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0798 ATGGGTAGGCCGCCCGGTAATGGAGGTCCTGCCTTCCGCTTTACTCAAGCTGAGGTTGCAGAAATGGAAGCAATTTTGCAAGAGCATAATAACGCTATGCCAGCACGTGATGTTCTCACAGCTCTAGCAGAGAAGTTCAGTGAATCTCCTGACCGTAAAGGAAAGATTACTGTGCAGATGAAGCAAGTTTGGAACTGGTTTCAAAATAAACGGTATGCTATAAGGGCAAGATCTAGTAAGGCTCCTGGAAAGTTAAGTATCACTCCTATGGTTCGAGATGACTCAACCCCAGTTAGAAATATGCCTCAACCAATGGCTGCTCCTATACCTCCTGCTTCAGTTTCAACAGGAAAAGGTGCTCCGGAAAACTCAGCAATGGAGTTTGAAGCTAAGTCTGGAAGGGATGGAGCATGGTACGATGTTGCAAACTTCCTATCCCACAGGCATTTAGAAACCAGTGATCCGGAAGCTCTGGTCCGCTTTGCTGGTTTTGGACCTGAGGAAGATGAGTGGATTAATGTGCGAAAAAATATCCGGCCACGTTCTCTGCCATGTGAATCATCAGAATGTGTGGCAGTTCTCCCTGGGGACCTCATACTGTGTTTTCAGGAAGGTAAGGAGCAGGCTCTCTACTTTGATGCTCACGTCCTTGATGCTCAAAGACGCAGGCATGATGTTAGAGGATGTCGTTGTAGATTTCTGGTTCGATACGATCATGATCAATCAGAGGAAATTGTTCCGCTTAGGAAGGTTTGTCGTAGGCCCGAGACTGATTACAGGTTACAACAACTTCATGCTGTGAACGAGGCAACACCCGTGGACCAGCAAAGGACCATGGACTTAACGCCTGTGCATGCTGTTAGGGTTACAAGCTCAGCTGAAACAGTGCCAAAACAGCAGAGTGCAAACAGTGCCATTGCCCCGCAAGCATTGCAAGCTACTGTTGCTTTAACCCCACAAACTATGAATATAGATCAGAGAAAAGCTGAAGTAGCCAATGATATGACCGGAGGAAACGCTGTCATCCGCCCCAGCAGTACTGTGTTTACCACTGGTGTCATTACCAGCAGCGTTCCCCCCAGTGGTACGGCATTTCCTGGCACTGTTACGATCAGTGGTGGTTCTGCGTTTCCCAGCAATGTTGTTACAAGCAGTGTTCCAGTAGTTTCAAATCCGAATCTAGCAGAAGGAAAATAA 1197 0.472 MGRPPGNGGPAFRFTQAEVAEMEAILQEHNNAMPARDVLTALAEKFSESPDRKGKITVQMKQVWNWFQNKRYAIRARSSKAPGKLSITPMVRDDSTPVRNMPQPMAAPIPPASVSTGKGAPENSAMEFEAKSGRDGAWYDVANFLSHRHLETSDPEALVRFAGFGPEEDEWINVRKNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKVCRRPETDYRLQQLHAVNEATPVDQQRTMDLTPVHAVRVTSSAETVPKQQSANSAIAPQALQATVALTPQTMNIDQRKAEVANDMTGGNAVIRPSSTVFTTGVITSSVPPSGTAFPGTVTISGGSAFPSNVVTSSVPVVSNPNLAEGK 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0798 398 CDD homeodomain 13 75 IPR001356 GO:0003677
Lele29g0798 398 SUPERFAMILY Homeodomain-like 4 79 IPR009057 -
Lele29g0798 398 Pfam SAWADEE domain 125 252 IPR032001 GO:0003682
Lele29g0798 398 Gene3D - 123 184 - -
Lele29g0798 398 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
Lele29g0798 398 Gene3D - 10 84 - -
Lele29g0798 398 SMART HOX_1 7 81 IPR001356 GO:0003677
Lele29g0798 398 PANTHER PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2 1 331 IPR039276 -
Lele29g0798 398 Gene3D - 185 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0798 Lele-ChrLele29 5214344 5219451 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Lele29g0798 SAWADEE 5.7e-40 CL0049