Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0792 ATGGAGAACTATTATCCCTCCTCCGACAACAACAACGATGCTCATTTGCCTCCTGGTTTTCGCTTTCACCCTACGGACGAAGAACTCATCACTTACTACCTCCTCAAGAAAGTTCTTGATAATAGCTTCTCTGGTAGAGCCATCGCAGAAGTTGATCTCAACAAATGTGAGCCATGGGAGCTTCCAGAGAAAGCGAAGATGGGAGAAAAGGAGTGGTACTTCTTTAGTCTGAGAGATAGGAAGTACCCAACTGGGTTAAGAACTAATAGGGCCACAGAAGCAGGATACTGGAAAGCTACTGGGAAAGACAGAGAAATTTATAGCTCAAAGACTTGCTGTTTAGTTGGGATGAAGAAGACTCTTGTCTTTTACAGAGGAAGAGCTCCAAAAGGGGAGAAAAGCAACTGGGTTATGCACGAATATCGCCTTGAAGGCAAATTTGCTTACCATTACCTCTCTCGCTCCTCCAAGGACGAGTGGGTCATTTCCCGAGTGTTCCAGAAGAGTAGCTCCGGTAACGGCGGCGGCGGCTCAGCCGCGATATCCTCCTCTTGCAGTGGCTCAAAGAAGACACGAAACATCATGAGCTCTTCTAACTTGAGTCTTTATCCTGAGCCCAGTTCTCCGTCTTCCGTTTACCTTCCACCTCTGCTTGATTCCTCTCCTTTCTCGGCCGCCGCCGCAGTCAACGATCGTGACAGTTGCTCTAATACTTTCGACGGTTTGAATACCCCAAGAGAGCACGTGTCCTGTTTCTCCACAACAATCTCTGCCACCGCCAGCAACAACTACAGCTTTGACCTGCCCGCCCCGCCGCCTCCTGTTACGGTGGACCCCTTTGCTCGTTTTCAGAGAAACGGGGGCGTCTCCTCCTTCCCCACCCTCAGGTCGCTGCATCTCCAAGACAGCCTTCAGCTTCCCTTCTTTATTCCGCAGCAGCCATTCCAGGGCGTTCCCGTCGACATGAACTGGGCTACACCGGTTGACGAACAGAAAGTGGCGGACGGTAGCTCCGGCATGACCGGTTTGGGTGGCTCTGAGCTAGATTGTATGTGGGGATTCTAA 1065 0.508 MENYYPSSDNNNDAHLPPGFRFHPTDEELITYYLLKKVLDNSFSGRAIAEVDLNKCEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCCLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSRSSKDEWVISRVFQKSSSGNGGGGSAAISSSCSGSKKTRNIMSSSNLSLYPEPSSPSSVYLPPLLDSSPFSAAAAVNDRDSCSNTFDGLNTPREHVSCFSTTISATASNNYSFDLPAPPPPVTVDPFARFQRNGGVSSFPTLRSLHLQDSLQLPFFIPQQPFQGVPVDMNWATPVDEQKVADGSSGMTGLGGSELDCMWGF 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0792 354 SUPERFAMILY NAC domain 12 168 IPR036093 GO:0003677|GO:0006355
Lele29g0792 354 Pfam No apical meristem (NAM) protein 17 143 IPR003441 GO:0003677|GO:0006355
Lele29g0792 354 MobiDBLite consensus disorder prediction 169 189 - -
Lele29g0792 354 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 224 - -
Lele29g0792 354 Gene3D NAC domain 25 172 IPR036093 GO:0003677|GO:0006355
Lele29g0792 354 ProSiteProfiles NAC domain profile. 16 168 IPR003441 GO:0003677|GO:0006355
Lele29g0792 354 FunFam NAC domain-containing protein 100-like 25 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0792 Lele-ChrLele29 5167886 5169744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0792 4 354 NAC Transcription Factor Family AT5G53950 51.316 1.02e-113 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lele29g0792 NAM 5.8e-41 No_clan