Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0783 ATGGAAGCCAAGATGGAGAGGAAGAGAACTTCAGTTGAGAAGGTAAGGAAGGACAACAACATAGTGGAAGAAGAAGAAGTAGAGGATGAGATAGAAGAGGAAGAAGAAATCAGTGGTGTTGCCGAAGAGCAGAAGAGGAAAGGTATCATGGGAAGTGGAAGAAGAGGGTCAAGTGGATGTGGCGGAGTTTCTCCACCTTCCTGTCAAGCAGAGAGGTGTGGAGCTGACCTGAGTGATGCAAAGCGGTACCATCGCCGCCATAGGGTGTGTGAGTTCCACTCTAAGGCACCAGTTGTCATGATTGCAGGGCTGAGGCAGAGGTTTTGCCAGCAATGTAGCAGGTTCCATGACTTGGGGGAATTTGATGAAGCCAAGAGAAGCTGCAGAAGGCGCTTGGCTGGGCACAACGAACGTCGCCGCAAAAGCACTGGTGAAATTTACAATGAGAGCTGCAGCCGTGGCAAAGGTCACCACACAAAGGAGAGCCATTGCAGGCATGCTGATGATAGAGGAAGAGTTCAAATGAGCGTTTCTGGGAGTTCTGGCTACAAATCTTTCACATAA 564 0.4947 MEAKMERKRTSVEKVRKDNNIVEEEEVEDEIEEEEEISGVAEEQKRKGIMGSGRRGSSGCGGVSPPSCQAERCGADLSDAKRYHRRHRVCEFHSKAPVVMIAGLRQRFCQQCSRFHDLGEFDEAKRSCRRRLAGHNERRRKSTGEIYNESCSRGKGHHTKESHCRHADDRGRVQMSVSGSSGYKSFT 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0783 187 MobiDBLite consensus disorder prediction 1 67 - -
Lele29g0783 187 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 51 159 IPR044817 GO:0003677
Lele29g0783 187 MobiDBLite consensus disorder prediction 138 172 - -
Lele29g0783 187 Coils Coil 5 44 - -
Lele29g0783 187 MobiDBLite consensus disorder prediction 23 38 - -
Lele29g0783 187 MobiDBLite consensus disorder prediction 133 187 - -
Lele29g0783 187 MobiDBLite consensus disorder prediction 1 22 - -
Lele29g0783 187 SUPERFAMILY SBT domain 66 146 IPR036893 GO:0003677|GO:0005634
Lele29g0783 187 FunFam Squamosa promoter-binding-like protein 14 60 129 - -
Lele29g0783 187 Gene3D - 59 129 IPR036893 GO:0003677|GO:0005634
Lele29g0783 187 ProSiteProfiles Zinc finger SBP-type profile. 65 142 IPR004333 GO:0003677
Lele29g0783 187 Pfam SBP domain 68 141 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0783 Lele-ChrLele29 5094705 5095494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0783 53 153 SBP-box Gene Family AT1G53160 68.627 3.57e-41 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lele29g0783 SBP 8e-32 No_clan