Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0761 ATGGAACCGGCGTGCTTTGACTGTAATGAGGGTGTCTCGAGTAAGAAAAATTTGAAATCAATTTCTTTGCAGACAGGCATAGCTGATAGTGATAATGGTTGCTTCGAGTGCAATATATGCTTGGAGTCAGCTCATGATCCTGTGGTCACTTTGTGTGGTCACCTGTACTGCTGGCCTTGCATATTCAAGTGGCTTCAAGTTCAGAACTCTTCCGATGAATCAGACCAACCGCAACCTACATGCCCGGTTTGTAAAGCCGATCTTTCTCATACTTCATTAGTCCCTCTTTATGGCCGAGGTGCACATAGTTCGGATTCTGAACTCAAGAAGAAAACCCAGATGGATAAAGGAATACCTCGTAGACCGCCTCCTCACAGCCCGAATGCTATGTTAAACTCTTCAAGTGCATCTACTTCTCAACTGGGTCAACTCCACCCGAGTTACTTCCAATCACAAACACAACATTTTTCCCAACTTTATGGAGGATATGCTGTTAATAGATCACCATATCTTGGAGTTGCAGCCCTGATTAGTTTCTCGTATCCCATTATCAATATGTTCAGGGAAACGGTCTTTGCAAGGAACTTTGGGAGTTCTGATTCTAATTCGTTGGCGTATCGTTATGTCGGCTACTACCCTCATATTGGAAGTGACAGCCATAGAATGAGAAGGCAGGAAATGCTCATTGACAAGTCTCTAAGCAGAGTATCTTTCTTTCTCCTCAGTTGTGTCATTCTGTGTCTTCTCTTGTTCTGA 756 0.4352 MEPACFDCNEGVSSKKNLKSISLQTGIADSDNGCFECNICLESAHDPVVTLCGHLYCWPCIFKWLQVQNSSDESDQPQPTCPVCKADLSHTSLVPLYGRGAHSSDSELKKKTQMDKGIPRRPPPHSPNAMLNSSSASTSQLGQLHPSYFQSQTQHFSQLYGGYAVNRSPYLGVAALISFSYPIINMFRETVFARNFGSSDSNSLAYRYVGYYPHIGSDSHRMRRQEMLIDKSLSRVSFFLLSCVILCLLLF 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0761 251 ProSiteProfiles Zinc finger RING-type profile. 37 85 IPR001841 -
Lele29g0761 251 MobiDBLite consensus disorder prediction 98 141 - -
Lele29g0761 251 MobiDBLite consensus disorder prediction 127 141 - -
Lele29g0761 251 CDD RING-HC_AtRMA_like 35 86 - -
Lele29g0761 251 Pfam RING-type zinc-finger 37 82 IPR027370 -
Lele29g0761 251 MobiDBLite consensus disorder prediction 103 118 - -
Lele29g0761 251 ProSitePatterns Zinc finger RING-type signature. 52 61 IPR017907 -
Lele29g0761 251 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 28 248 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lele29g0761 251 SMART ring_2 37 84 IPR001841 -
Lele29g0761 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 135 IPR013083 -
Lele29g0761 251 SUPERFAMILY RING/U-box 33 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0761 Lele-ChrLele29 4939126 4939881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0761 9 237 C3H Transcription Factor Family AT4G27470 42.918 2.48e-51 166