LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele29g0682	ATGGCCCACAGATTCGATCCCCCGGAAGAATCCGAACCTCTAACGGAGACGGGAATGGACTCTCCGTCGTCCGGTGATGACATCAATACTGCAGCACCATCTCCCAAGAAAAGGAAGGGGATAAAGAAGAAGGTGGTGATGGTACCGATCGGTGACGTGGAGGGATCTAAGAGCAGAGGCGAGACGTATCCACCGTCCGATTCTTGGGCTTGGAGAAAGTACGGCCAGAAGCCTATCAAAGGCTCTCCGTATCCCAGGGGTTATTACCGATGTAGTAGTTCGAAGGGTTGTCCCGCCAGGAAACAGGTAGAGAGAAGCCGTGTGGACCCCACAAAGCTCATCGTCACCTACGCTCACAACCACAACCACTCTGTTCCGGCCGGCAAGCTTCACTCCGCCACCTCCCCCTCTTCCTCCTCCTCCGCTGTCACATCGGTTGCTGTTGCTGACGCTAATGACCCCGTACCGACCGGATTGGAATCTAAAGTCGAATCGGAAGAGAATCTCGCGGTGTTCTCCGCCCATCCCGATCTAGAACTTGACGGCGACTCGGCTGTTCTGCTCGGCTACCACCATGGCCAATTCGGATGGTTCGACGACATGGCATCCACGACGAGAGTGCTGGAAAGCCCGATCTTCGGCGCAGAGTTGGAGGATGTGGCGTTGACGACGATGACGGAGGATGAAGACGAGTCGCTGTTCGCGGACCTTGGCGAGTTGCCGGAATGTTCGGTGGTTTTCGGGAGAAGGAATATTCCTAGATCGAGCGCGATCCAGTGCGGTGGGATCACAGGATAA	798	0.5589	MAHRFDPPEESEPLTETGMDSPSSGDDINTAAPSPKKRKGIKKKVVMVPIGDVEGSKSRGETYPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRVDPTKLIVTYAHNHNHSVPAGKLHSATSPSSSSSAVTSVAVADANDPVPTGLESKVESEENLAVFSAHPDLELDGDSAVLLGYHHGQFGWFDDMASTTRVLESPIFGAELEDVALTTMTEDEDESLFADLGELPECSVVFGRRNIPRSSAIQCGGITG	265

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele29g0682	265	MobiDBLite	consensus disorder prediction	1	72	-	-
	Lele29g0682	265	ProSiteProfiles	WRKY domain profile.	66	126	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lele29g0682	265	MobiDBLite	consensus disorder prediction	16	30	-	-
	Lele29g0682	265	SUPERFAMILY	WRKY DNA-binding domain	61	126	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Lele29g0682	265	Pfam	WRKY DNA -binding domain	67	123	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lele29g0682	265	Gene3D	WRKY domain	52	127	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Lele29g0682	265	FunFam	WRKY transcription factor 65	52	126	-	-
	Lele29g0682	265	PANTHER	WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED	19	245	IPR044810	GO:0003700
	Lele29g0682	265	SMART	WRKY_cls	65	125	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele29g0682	Lele-ChrLele29	4264250	4266178	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele29g0682	9	252	WRKY Transcription Factor Family	AT3G58710	51.793	1.82e-71	219

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Lele29g0682		WRKY	1.4e-24	CL0274