Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0659 ATGGTTTCCCCGGAAAACTCCAATTGGTTTTTCGATTATGGCCTGATTGACGACATATCCGTACCTGATGGGAACTTCACTGTCCATGCCTCCGGTGGGTTCACCTGGCCGGCGCAGGCCATTAATGGTTCTTCAAATGTCAGCATGGAAATTGATGCCTCATTGGGGGATTCTGATGGCCTCAAAGAACCTGGTTCAAAGAAGAGGAGTAGATCTGATTCTTGTACTGCTTCCAGCTCCAAGGCATGTCGTGAGAAATTGCGCAGGGATAGGTTGAATGACAAGTTTGTTGAATTAGGCTCCATTTTGGAGCCTGGAAAGCCTCCCAAAACAGACAAAGGTGCCATTTTGATTGATGCTGTTCGAATGGTGACACAGTTAAAGGGTGAAGCCCAGAAGTTGAAAGATTCAAGTGCGAGTCTCCAAGAGAAGATAAAAGAGTTGAAGGCTGAGAAGAATGAACTTCGCGATGAGAAACAGAGGCTCAAGGGAGAGAAAGAAAAGTTGGAGCAGCAGCTGAAAACTATCAATGTACAGCCTAGTTTCTTGCCTCCCCCGCCTGCAATTCCTGCTGCATATGCTGCTGCTGCGCAAGGCCAAACCCCCGGCAACAAGTTGGTACCATTTATCAGTTATCCAGGAGTTGCCATGTGGCAATTTATGCCACCAGCTGCAGTGGATACTTCACAGGATCATGTACTCCGTCCACCAGTTGCCTAA 720 0.4764 MVSPENSNWFFDYGLIDDISVPDGNFTVHASGGFTWPAQAINGSSNVSMEIDASLGDSDGLKEPGSKKRSRSDSCTASSSKACREKLRRDRLNDKFVELGSILEPGKPPKTDKGAILIDAVRMVTQLKGEAQKLKDSSASLQEKIKELKAEKNELRDEKQRLKGEKEKLEQQLKTINVQPSFLPPPPAIPAAYAAAAQGQTPGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0659 239 CDD bZIP 142 174 - -
Lele29g0659 239 Pfam Helix-loop-helix DNA-binding domain 80 127 IPR011598 GO:0046983
Lele29g0659 239 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 78 146 IPR036638 GO:0046983
Lele29g0659 239 SMART finulus 82 133 IPR011598 GO:0046983
Lele29g0659 239 FunFam Transcription factor bHLH34 67 125 - -
Lele29g0659 239 Coils Coil 124 179 - -
Lele29g0659 239 MobiDBLite consensus disorder prediction 52 82 - -
Lele29g0659 239 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 76 127 IPR011598 GO:0046983
Lele29g0659 239 Gene3D - 79 153 IPR036638 GO:0046983
Lele29g0659 239 PANTHER BHLH TRANSCRIPTION FACTOR 4 239 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Lele29g0659 239 CDD bHLH_AtILR3_like 81 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0659 Lele-ChrLele29 4124401 4126914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0659 1 239 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 72.199 1.17e-118 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele29g0659 HLH 9.4e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0659 29 4124401 4126914 Lele31g0878 31 16269880 16272449 hybridization
Lele29g0659 29 4124401 4126914 Lele32g0641 32 4005647 4008150 hybridization