Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0643 ATGGCGGCAATGAGAGCGGCAGTAGCGGCGCCTCGCGGTCTAAGGCGGCTATTCTCAACCAGTACAACTTCAACCTTCATGCCTCCTTCGGCCTCGGCGGCGGTTTCTGCCCGAGAGAAGGCCGAGCCCAGTCCCAACCTCTTCGTCTCTGCTAGAGTTGTAACCGACAGGGGATCAGGTTACTCCAAAGGGTTTGGCTTTGTAAGGTATGCCACCGTGGAAGAAGCTGCAAAAGGCATTGCTGGCATGGATGGAAAGTTTCTGGATGGTTGGGTTATATTTGCGGAGTATGCGAAACCGAGACCACCACCGGGACAACCTATGCCGCCTCCGTATGGCCAGCAGTGA 348 0.5603 MAAMRAAVAAPRGLRRLFSTSTTSTFMPPSASAAVSAREKAEPSPNLFVSARVVTDRGSGYSKGFGFVRYATVEEAAKGIAGMDGKFLDGWVIFAEYAKPRPPPGQPMPPPYGQQ 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0643 115 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 90 IPR000504 GO:0003723
Lele29g0643 115 Gene3D - 13 115 IPR012677 -
Lele29g0643 115 SUPERFAMILY RNA-binding domain, RBD 49 113 IPR035979 GO:0003676
Lele29g0643 115 PANTHER NUCLEOLAR PROTEIN 8 49 105 - -
Lele29g0643 115 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 48 100 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0643 Lele-ChrLele29 3973282 3975562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0643 53 102 Eukaryotic Initiation Factors Gene Family AT3G11400 38.000 2.07e-07 45.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0643 29 3973282 3975562 Lele31g0898 31 16413785 16416610 hybridization
Lele29g0643 29 3973282 3975562 Lele32g0627 32 3918712 3922563 hybridization