Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0640 ATGTCCTCCATCCCGTTGGGGCCGCACCAGCACCGACCACTGGCGGCGGCTCCCCAACCACCACCTCCGTTGCCGGTGCAAGCGGAGAATGACAAGGAAATGTCAGCTACAGTCCTTGAGGGGAATGATGCAGTCACTGGCCACATAATCTCCACCACAATTGGAGGCAAAAATGGTGAACCTAAGCAGACCATCAGTTACATGGCAGAACGTGTTGTTGGCACCGGTTCATTTGGAATTGTTTTCCAGGCAAAGTGTTTGGAGACTGGGGAAGCAGTGGCTATAAAGAAGGTCTTGCAGGACAGGCGGTACAAGAATCGGGAGCTGCAGTTAATGCGCATGATGGATCACCCAAACATCATTTCCCTGAAGCACTGTTTCTTCTCTACCACAAGCCGAGATGAACTTTTTCTCAATTTGGTTATGGAATATGTCCCTGAAACATTGTACCGAGTTCTGAAACACTATACTAATATGAACCAAAGGATGCCTCTCATCTATGTGAAACTTTATACATATCAAATCTTCAGGGGTCTAGCATACATCCATACGGTACCAGGAGTTTGCCATAGAGATGTGAAACCTCAAAATCTTTTGGTCGATCCTCTCACTCATCAAGTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTTCTGGTCAATGGTGAATCAAACATTTCATACATATGTTCACGTTACTATCGGGCTCCAGAACTAATATTCGGTGCAACAGAATACACTTCTTCTATTGATATTTGGTCAGCTGGTTGCGTCCTTGCTGAGCTGCTTCTAGGTCAGCCATTATTTCCAGGAGAAAATCAGGTGGACCAACTTGTGGAAATCATCAAGGTTCTTGGTACTCCAACTCGAGAAGAAATTCGTTGCATGAACCCTAATTATACAGATTTTAGATTTCCTCAGGTTAAAGCTCATCCGTGGCACAAGGTTTTCCTCAAGCGAATGCCTCCTGAAGCAATTGACCTTATATCAAGGCTTCTCCAATATTCGCCAAGTCTTCGCTTCAATGCGCTGCAAGCATGTACACATCCTTTCTTTGATGATCTCCGGGAGCCCAATGCCCGACTACCCAATGGCCGTCCACTGCCCCCACTTTTCAATTTCAAACAGGAACTGTCCGGGCAATCGCCAGAAATGATAAATAGGCTCATCCCGGAGCATATTAGGCGGCAGATTGGTCTCACCTTCACTCATCCGGCTAGTACATAG 1224 0.4608 MSSIPLGPHQHRPLAAAPQPPPPLPVQAENDKEMSATVLEGNDAVTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGEAVAIKKVLQDRRYKNRELQLMRMMDHPNIISLKHCFFSTTSRDELFLNLVMEYVPETLYRVLKHYTNMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVDPLTHQVKLCDFGSAKVLVNGESNISYICSRYYRAPELIFGATEYTSSIDIWSAGCVLAELLLGQPLFPGENQVDQLVEIIKVLGTPTREEIRCMNPNYTDFRFPQVKAHPWHKVFLKRMPPEAIDLISRLLQYSPSLRFNALQACTHPFFDDLREPNARLPNGRPLPPLFNFKQELSGQSPEMINRLIPEHIRRQIGLTFTHPAST 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0640 407 FunFam Shaggy-related protein kinase kappa 147 394 - -
Lele29g0640 407 Pfam Protein kinase domain 67 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele29g0640 407 CDD STKc_GSK3 62 354 IPR039192 -
Lele29g0640 407 FunFam Glycogen synthase kinase-3 beta 51 146 - -
Lele29g0640 407 Gene3D Phosphorylase Kinase; domain 1 52 146 - -
Lele29g0640 407 MobiDBLite consensus disorder prediction 1 28 - -
Lele29g0640 407 ProSitePatterns Protein kinases ATP-binding region signature. 73 97 IPR017441 GO:0005524
Lele29g0640 407 ProSiteProfiles Protein kinase domain profile. 67 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele29g0640 407 Gene3D Transferase(Phosphotransferase) domain 1 147 394 - -
Lele29g0640 407 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 31 396 - -
Lele29g0640 407 SUPERFAMILY Protein kinase-like (PK-like) 66 380 IPR011009 -
Lele29g0640 407 SMART serkin_6 67 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele29g0640 407 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0640 Lele-ChrLele29 3961825 3966465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0640 73 354 Core Cell Cycle Gene Families AT3G48750 35.395 9.91e-58 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Lele29g0640 Pkinase 1.1e-64 CL0016