Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0628 ATGAATATAAATGGGCGGAGCCAACGGCCACAATTGGAGGTGCGAACGACAGTGGCGGCTGTGGTTAGAGATGCGATGAATATAAAGAATGGTAAGACAATAGAACCTGGGATGAATATGGTGGAGTCGACGGCCACGGTTGGAGGTGCGAACGACAGTGTTGGCTGCAGTTGGAGGTGCGACAGAGATGGCCTTCGTCGCAGGGAGGGAAGGAAAGAAAAAATGAAGGGGAAGTGGAAGGACTATGGGGGCCTGGGAGCATTGCATAAGTTCACAGTGAGAGAGATGGCGACTCGGAACATTGAAAAGATGTGTTCCATTGATGCTCAACTGAGGTTGCTGGCTCCTGGAAAGGTGTCTGATGATGATAAGTTAGTCGAGTATGATGCTTTGTTGATGGACCGATTCCTCGACATTCTTCAGGATTTGCATGGCGAAGACATCAGAGAAACGGTTCAAGATTGCTATGAGCTGTCAGCTGTGTATGAAGGGAAGCATGACCCTGAGAAGTTGGAGGAGCTTGGGAATAAGTTGACTGGTCTCGATGCTGGGGACTCTATCGTGGTGGCCAAATCATTTTCTCATATGCTGAATTTGGCCAACTTGGCCGAGGAAAGGCTTGTGAATCAATTGAAGAAGAACCCGCAGGAAGTGTTTGATGCTTTGAAGAACCAAACTGTAGATTTGGTCCTGACTGCTCATCCTACTCAGTCTGTCCGAAGATCTTTGCTACAAAAGCATTCTAGGATAAGGAATTGCTTAACTCAATTGTATGCTAAAGACATAACACCTGACGATAAGCAGGAACTTGATGAGGCCTTACAAAGGGAGATTCAAGCTGCATTTCGTACAGATGAAATTAGAAGGAGTCCTCCTACCCCTCAAGACGAGATGAGGGCAGGAATGAGCTACTTTCATGAAACAATCTGGAAGGGTGTACCTAAGTTTTTGCGCCTGGTTGACACAGCTCTAAAGAACATTGGAATAAATGAACGTGTGCCATATAATGCCCCTGTTATTCAATTCTCTTCTTGGATGGGAGGGGATCGTGATGGAAACCCCAGAGTAACCCCAGAAGTTACAAGAGATGTTTGCTTATTAGCTAGAATGATGGCTGCTAATTTGTACTTCTCTCAGATAGAAGATCTTATGTTTGAGTTGTCAATGTGGCGCTGCAATGATGAGCTCCGTGTTCGTGCTGATCAACTCCATAGTTCATCAAAAAGAGATGCAAAACATTATATTGAGTTTTGGAAGAAGATTCCTCCTAATGAACCATATCGTGTTGTTCTTGGTGATGTGAGAGACAAACTGTATAATACACGTGAACATGCTCGTCAAATATTAGCTAATGGGACCTCTGACATCCCTGAGGAGACAACCTTCACAAATGTTGAGCAGTTCCTGGAGCCTCTTGAACTCTGCTATAGGTCACTCTCTGCCTGTGGGGACCGATCAATAGCTGATGGAAGCCTCCTTGATTTCTTACGGCAAGTTTCAACTTTTGGACTGTCACTTGTAAGGCTTGACATTCGTCAAGAATCGGACAGGCACACTGATGTTATGGATACAATTACAAGGCACTTGGGTATTGGTTCTTACCGAGAATGGTCTGAGGAACGGCGGCAGCAATGGCTCTTGTCTGAGCTCAGTGGGAAGCGTCCTCTTTTTGGCAATGATCTTCCTAAAACTGAAGAAATTTCTGTTGTGTTAGAAGCCTTCCATGTCATTGCAGAACTTCCACCAGACAATTTTGGTGCCTACATCATCTCAATGGCAACTTCTCCATCTGATGTGCTTGCTGTAGAGCTTTTACAGCGTGAATGTCATGTGAAAAAGCCATTAAGGGTTGTCCCCTTGTTTGAAAAGCTTGCTGATCTTGAGGCTTCTCCTGCTGCATTAGCTCGTCTGTTCTCTATAGATTGGTACAGAAACCGCATAAATGGGAAGCAAGAAGTTATGATAGGATACTCAGACTCGGGAAAGGATGCTGGCCGCCTCTCTGCAGCTTGGGCACTATACAAAGCTCAAGAAGAGCTCATAAAGGTTGCAAAGGAGTTTGGCATTAAGCTTACAATGTTCCATGGAAGAGGAGGAACTGTTGGAAGAGGAGGAGGTCCCACTCATCTTGCTATACTGTCTCAGCCCCCAGAGACCATTCATGGATCACTTCGTGTAACGGTTCAAGCTGCTACATTAGAGCATGGAATGCATCCTCCTGTGTCTCCAAAGCCAGAATGGCGAACTCTCATGGATGAGATGGCAGTTATTGCAACGAAGGAGTATCGCTCTGTTGTTTTCCAGGAACCCTGTTTTGTTGAATACTTCCGATGTGCAACACCAGAGTTGGAGTATGGACGTATGAACATTGGGAGCCGTCCCTCAAAAAGAAAGCCAAGTGGGGGCATCGAATCACTTCGGGCTATTCCATGGATCTTTGCTTGGACCCAAACAAGGTTTCACCTTCCAGTATGGCTTGGCTTTGGGTCAGCATTTAAGCATGTGATTGAGAAGGATCCCAAGAATCTCCAAATGCTTCGAGATATGTATAATCAATGGCCTTTCTTCAGAGTAACCCTTGATCTGATTGAGATGGTGTTCGCCAAGGGTGACCCAGGAATTGCTGCTTTATATGACAGACTCCTAGTGTCAGGAGAACTACGGGCTCTTGGAGAGCGCTTAAGGTCTAAATATGAAGACACCAAAAGCCTTCTTCTCCAGATTGCTGGGCACGGAGATGTTCTTGAGGGAGACCCTTACTTAAAGCAAAGACTCCAACTTCGAGATTCACACACGACAACTCTGAATGTGTTGCAAGCTTACACTTTGAAGCGAATCCGTGATCCAGACTACCATGTGAAGCTGAGGCCTCATTTGTCAAAGGAGTATATGGAATCAAGCAAACCAGCAGCAGAGCTTGTGAAACTGAACCCAACAAGCGACTATGCTCCTGGTCTGGAGGACACACTTATTTTGACAATGAAGGGTATTGCTGCTGGCATGCAAAACACTGGTTAA 3018 0.4559 MNINGRSQRPQLEVRTTVAAVVRDAMNIKNGKTIEPGMNMVESTATVGGANDSVGCSWRCDRDGLRRREGRKEKMKGKWKDYGGLGALHKFTVREMATRNIEKMCSIDAQLRLLAPGKVSDDDKLVEYDALLMDRFLDILQDLHGEDIRETVQDCYELSAVYEGKHDPEKLEELGNKLTGLDAGDSIVVAKSFSHMLNLANLAEERLVNQLKKNPQEVFDALKNQTVDLVLTAHPTQSVRRSLLQKHSRIRNCLTQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRSPPTPQDEMRAGMSYFHETIWKGVPKFLRLVDTALKNIGINERVPYNAPVIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYFSQIEDLMFELSMWRCNDELRVRADQLHSSSKRDAKHYIEFWKKIPPNEPYRVVLGDVRDKLYNTREHARQILANGTSDIPEETTFTNVEQFLEPLELCYRSLSACGDRSIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDVMDTITRHLGIGSYREWSEERRQQWLLSELSGKRPLFGNDLPKTEEISVVLEAFHVIAELPPDNFGAYIISMATSPSDVLAVELLQRECHVKKPLRVVPLFEKLADLEASPAALARLFSIDWYRNRINGKQEVMIGYSDSGKDAGRLSAAWALYKAQEELIKVAKEFGIKLTMFHGRGGTVGRGGGPTHLAILSQPPETIHGSLRVTVQAATLEHGMHPPVSPKPEWRTLMDEMAVIATKEYRSVVFQEPCFVEYFRCATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGSAFKHVIEKDPKNLQMLRDMYNQWPFFRVTLDLIEMVFAKGDPGIAALYDRLLVSGELRALGERLRSKYEDTKSLLLQIAGHGDVLEGDPYLKQRLQLRDSHTTTLNVLQAYTLKRIRDPDYHVKLRPHLSKEYMESSKPAAELVKLNPTSDYAPGLEDTLILTMKGIAAGMQNTG 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0628 1005 PRINTS Phosphoenolpyruvate carboxylase signature 342 357 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lele29g0628 1005 PRINTS Phosphoenolpyruvate carboxylase signature 693 722 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lele29g0628 1005 PRINTS Phosphoenolpyruvate carboxylase signature 651 671 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lele29g0628 1005 PRINTS Phosphoenolpyruvate carboxylase signature 502 522 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lele29g0628 1005 PRINTS Phosphoenolpyruvate carboxylase signature 229 242 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lele29g0628 1005 PRINTS Phosphoenolpyruvate carboxylase signature 282 298 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lele29g0628 1005 ProSitePatterns Phosphoenolpyruvate carboxylase active site 1. 230 241 IPR018129 -
Lele29g0628 1005 Gene3D Phosphoenolpyruvate/pyruvate domain 370 505 - -
Lele29g0628 1005 ProSitePatterns Phosphoenolpyruvate carboxylase active site 2. 653 665 IPR033129 -
Lele29g0628 1005 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 128 1005 IPR015813 GO:0003824
Lele29g0628 1005 FunFam Phosphoenolpyruvate carboxylase 1 370 505 - -
Lele29g0628 1005 Pfam Phosphoenolpyruvate carboxylase 209 729 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lele29g0628 1005 Pfam Phosphoenolpyruvate carboxylase 132 208 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lele29g0628 1005 Hamap Phosphoenolpyruvate carboxylase [ppc]. 118 1005 IPR022805 GO:0006099|GO:0008964|GO:0015977
Lele29g0628 1005 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 100 205 IPR021135 GO:0006099|GO:0008964|GO:0015977
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0628 Lele-ChrLele29 3823378 3837244 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g0793 11 8026206 8030030 Lele29g0628 29 3823378 3837244 CCT
Lele12g0549 12 13824618 13826948 Lele29g0628 29 3823378 3837244 CCT
Lele29g0628 29 3823378 3837244 Lele31g0914 31 16561967 16567687 hybridization
Lele29g0628 29 3823378 3837244 Lele32g0612 32 3772810 3778581 hybridization