Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0618 ATGCAGGGACTGGGGTTCGATTCTCTCACTACTAGATTCCGCGATTTGTTGGGTTCTGACGGAAACAAGCCTGATCTTAAAGAACTCGATCTGGGTTCTCCTTTTTCTCCATTGAAAACCCCTGCCACTGTTAATGCTGCCGGTGCCGGCGCCGGCGCTTCTAACAACACCTCAAGCTGCAGCTCCAGCTCCTCCGCCGGATCGGTTTCCGAAAGCAGAAATACCGTGGCCAAGTTGCCCGGTAAACCGGACGGGAAGCACGGCGACAACTCCGGTAAGCTCCGTGAGACCAACTCAAACGCCTCCGAGAGCCTTCAATTGGCTTCGGCATCCCGACGCACTAAGCCGGGTCATAGGAGATCGGTTTCAGCTGGATCGCCGTTAATATACTCCGGTGGAAGTTCTAGCAGCTCGGGGAATAACAGTAATTCAAATGGTGCAACTTCAGGGAGTAATTTTCTCCCAACCGGCAATATTTGTCCGACAGGGAAGATCTCAAAAATCGGTTTGGCGCCTAGAACGCCCAATAGAACTGATGTTTTGGGCTCAGGGACGGTAAACTACGGCCGAGGCAACATAATGCGCGGTGGCGGGAAATTGGGCAATGGAGCGCACGTCATCGTCGACGACAATGTCGCCGGGAATTCTCATCTCGGAGGGGTTTCGAGCATTGTGAAGCGGGCAAGGAGTAGTTCTGATCCTGAGGAGGTTAAAAAAGCTGGAAATGAGCTATATAGAAGCGGTCACTTTGCGGAGGCATTGTCGTTGTACGATCGCGCAATCTCCATATCACCCAATAATCCTGCTTTCCGGAGTAATCGGGCGGCAGCATTGAGCGCACTGGGGAAGTTGGCCGTGGCGGCGAAGGAGTGCGAAGAAGCTGTGAAATTGGACCCTGGTTATGCCAGGGCTCATCAGAGACTGGCTTCACTCTATCTGCGCTTTGGGCAGGTTGAGAATGCGCAGAGCCATCGGTGTCTTCCTGGAAAACAGGTGAATCAATCTGAACTGCACAAATTGGGGCTATTAGAGAAGCATTTGAAACGATGTGCAGAAGCACGAAAGATTGGTGATTGGAAAAGTGCAGTTAGGGAATCAGAAGCAGCCATTGCTGTTGGAGCAGATTACTCTCCCCAGCTTGTGGCTTGTAAAGCTGAAGCCTATTTGAAACTTCATCTTCTTGACGACGCTGAGTCTACCCTCTCCAACATTCCAAAGCTGGAGAGTTGCTCTAAGACCAAGTTCTTTGGTATGATTGGGGAAGCATATGTTCCCTTTGTTCGAGCTCAGGTTGAGATGGCCTTAGGAAGGTTTGAGAATGCAGTAGCAGAAGCAGAGAAGGCTAGTTTGATAGCTTATAGCAACATGGAAGTTGCAAAGGTAGTAAATACTGTGAAAATGGTGGCAAGGGCTCGCTCTCGAGGCAACGATCTTTTTGGCCGGGGAAGATTTTCTGATGCTTGTTCTGCTTATGCAGAAGGCCTCAAATATGATAGTTCCAACTATGTGTTGTTCTGCAATAGAGCTGTTTGCTGGTCTAAGCTTGGACTGTGGGAAAAATCTGTTGAGGACTGCAACCATGCTCTGCAAATCCAACCAAACTGTACCAAAGCCCTTCTACGTAGGGCTGCCTCAAATTCTAAGCTTGAAAGGTGGGGAGATGCTATAAGAGATTATGAAGCATTAAAGCGTGAACTTCCCAGAGACAGTGAAGTTGCCGAGTCTCTTCATCGGGCTCAGCTTGCCTTGAGTAAATCTCGCGGGGAAGATTGTGGTTCAAAACTTGTTCTTGAGGTTGAAGAGGTCTTTACATTAGATAGATTCAAAGCTGCAATTGCTTCTTCTGGTATCTCAGTGGTTCATTACAAGAAGGCATCTAATGAGCAATGTGAAAAAATATCCCCTTTCATAAATACGCTCTGCATTCAATACCCATATGTTAAATTCATCAAGGTGGATGTGGAAGACTGTACAAGTGTAGCAAAAGCTGAGAGCATAAGAGCAGTGCCAAGCTTCAGAATATATGCAAATGGAGAGAAGGTGATGGAGATGATAAGACCAAGCCATCAATTGTTGGAGGATTCTGTGAGGAACTGTTGGGGTGGACCAATTTCCGGACTAGCCGTGGATGAACCAGTGGGAGCTGAGAGTGATGGTGTCGACGCTGACGACGCGGATGCAGAATGCAGAGGTGGTGTTCGTGAATCTGACTGGTGA 2217 0.4858 MQGLGFDSLTTRFRDLLGSDGNKPDLKELDLGSPFSPLKTPATVNAAGAGAGASNNTSSCSSSSSAGSVSESRNTVAKLPGKPDGKHGDNSGKLRETNSNASESLQLASASRRTKPGHRRSVSAGSPLIYSGGSSSSSGNNSNSNGATSGSNFLPTGNICPTGKISKIGLAPRTPNRTDVLGSGTVNYGRGNIMRGGGKLGNGAHVIVDDNVAGNSHLGGVSSIVKRARSSSDPEEVKKAGNELYRSGHFAEALSLYDRAISISPNNPAFRSNRAAALSALGKLAVAAKECEEAVKLDPGYARAHQRLASLYLRFGQVENAQSHRCLPGKQVNQSELHKLGLLEKHLKRCAEARKIGDWKSAVRESEAAIAVGADYSPQLVACKAEAYLKLHLLDDAESTLSNIPKLESCSKTKFFGMIGEAYVPFVRAQVEMALGRFENAVAEAEKASLIAYSNMEVAKVVNTVKMVARARSRGNDLFGRGRFSDACSAYAEGLKYDSSNYVLFCNRAVCWSKLGLWEKSVEDCNHALQIQPNCTKALLRRAASNSKLERWGDAIRDYEALKRELPRDSEVAESLHRAQLALSKSRGEDCGSKLVLEVEEVFTLDRFKAAIASSGISVVHYKKASNEQCEKISPFINTLCIQYPYVKFIKVDVEDCTSVAKAESIRAVPSFRIYANGEKVMEMIRPSHQLLEDSVRNCWGGPISGLAVDEPVGAESDGVDADDADAECRGGVRESDW 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0618 738 SUPERFAMILY TPR-like 345 458 IPR011990 GO:0005515
Lele29g0618 738 MobiDBLite consensus disorder prediction 724 738 - -
Lele29g0618 738 SUPERFAMILY TPR-like 235 323 IPR011990 GO:0005515
Lele29g0618 738 MobiDBLite consensus disorder prediction 94 111 - -
Lele29g0618 738 Coils Coil 428 448 - -
Lele29g0618 738 MobiDBLite consensus disorder prediction 49 75 - -
Lele29g0618 738 Gene3D Tetratricopeptide repeat domain 232 588 IPR011990 GO:0005515
Lele29g0618 738 Gene3D Glutaredoxin 592 699 - -
Lele29g0618 738 MobiDBLite consensus disorder prediction 127 155 - -
Lele29g0618 738 Pfam Thioredoxin 603 686 IPR013766 -
Lele29g0618 738 SMART tpr_5 234 267 IPR019734 GO:0005515
Lele29g0618 738 SMART tpr_5 502 535 IPR019734 GO:0005515
Lele29g0618 738 SMART tpr_5 422 455 IPR019734 GO:0005515
Lele29g0618 738 SMART tpr_5 268 301 IPR019734 GO:0005515
Lele29g0618 738 SMART tpr_5 468 501 IPR019734 GO:0005515
Lele29g0618 738 SMART tpr_5 536 569 IPR019734 GO:0005515
Lele29g0618 738 SUPERFAMILY Thioredoxin-like 597 688 IPR036249 -
Lele29g0618 738 MobiDBLite consensus disorder prediction 713 738 - -
Lele29g0618 738 CDD TRX_family 608 693 - -
Lele29g0618 738 Pfam TPR repeat 241 282 - -
Lele29g0618 738 SUPERFAMILY TPR-like 473 584 IPR011990 GO:0005515
Lele29g0618 738 MobiDBLite consensus disorder prediction 14 155 - -
Lele29g0618 738 FunFam TPR repeat-containing thioredoxin TTL4 595 700 - -
Lele29g0618 738 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 29 697 IPR044534 -
Lele29g0618 738 ProSiteProfiles TPR repeat profile. 234 267 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0618 Lele-ChrLele29 3788183 3792380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0618 467 538 U-box Gene Family AT3G07370 36.111 8.81e-07 49.3