Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0617 ATGGAAGCATTTGATTGGAGATCTGGTGTTCGGGGAAATGCCTCAGAGACAAGTCCTGATGATTTTCTGGATAATTCTGCTGTAATAGGAAGAGGCTTTGCTTCATCTTCATCTTTGGTGTTGGACACAGAGAAGGGAGAGCTTGTGGCTGCTCCTGTCAAACTGGAATGCAAGAGTGTCTCCACTGAGAGAAGTGTTGAAAGTTTGAAGAACCATAGCGAAGCAGAGAGGAGGAGGAGAGCAAGGATTAATTCGCATCTTGACACTCTTAGGAGTGTAGTTCCTGGTGCTAAGAAGATGGACAAAGCGTCGTTACTTGGCGAGGTTATCAGACATTTGAAAGAGCTGAAAAGGAATGCAGCTCAAGCATGTGAGGGTTTGATGATACCAAAGGACAGTGATGAAATAAGCGCTGAAGAACAAGAAGATGGTTCAAATGGCTTCCCTTATTCGATCAAAGCATCACTATGCTGTGAATATAAACCTGGGTTGTTGCCTAAATTAAGACAAGCACTTGATGCTCTTCATCTTAAGATAATGATGGCAGAAATTGCAACACTGGGAGGCAGAATGAAGAATGTGTTTGTTATAATTAGCTGTAAAGAACACAACATTAATGAAGATGCTGCATATCGTCAGTTTCTTGCAGTCTCTGTTCATCAAGCTATTAGGTCTCTACTTTATAGATACTCTTGTTCAGAAGATCTCTTAGGAACCAGAAAGAGACGGAGACTTTCTATATTCAGTTCATCACCTTTTGGAGATTTCTTTGTAATGACGGAGGGATTGCCTGATTGTACAGATTACTTGAATCCATTCCATGCATATGATGAGGGCAATCTTACGTGGCTGAAGCATGTCAAAGAATTCTCTAAGTTTGTAGAATTTCTCCAGCTTCAGGCAGCTGAAGCAGAGGCTGCTACTTTGTCAATGGGGCTAGATCTGTCACCTTATTTTCTTGCTGTAACTCAACTTAAGGAAAAGGAAAGAGCACAACCACGTGACTATTCCATAAGCTGGATACATGCAAATGGAGAAAACGCAGGCTTGCCTTCCAAGTCTTTTGACATCGTTTCCATTGCTTTTGTGCTTCACGAATGTCCTGAACGAGCTATAGTGAACTTAGTAAAGGAAGCATTCCGTCTTCTTCGACCTGGAGGCACCATTGCTTTGACAGATAATTCGCCCAAATCGAAGATTGTTCAGATACCCCCCAGGAAGAGTGCAGTTTCTTACAGGGCTGATGAATGGGATGTCAACAAATGGGCATGGGATGGAGTATTGAAAGTTATTAGCAAGGGAGAGGAATGCATTATAAGGCTTGAAGATAAGAAAACAGATATTTTGTTCTTCGCGAAGAAGAGAACAAAGTTTGTCTTACAAAGTGGAGATCCTGCAGGTGGTCGTCTTCGGCATGCTTTCATTGGCATAGGATTCCGAGAAAGAACAAAAGCATATGACTTCCAAGCTGCTTTGCATGACCCTATGATTTACATGCTTCTTGTTTTTCAAAATATTTTGTTCTTCATGATAGAGGAGACCACTAAAACAGTCAGTGAAGACCAGGATTGCCAGAGTCCTCCAAAAGACCAAATTACAGAGGATGTACCAGATGATGATGACTTTGGCGACTTTCAAGCAGCTGGTTAA 1650 0.4182 MEAFDWRSGVRGNASETSPDDFLDNSAVIGRGFASSSSLVLDTEKGELVAAPVKLECKSVSTERSVESLKNHSEAERRRRARINSHLDTLRSVVPGAKKMDKASLLGEVIRHLKELKRNAAQACEGLMIPKDSDEISAEEQEDGSNGFPYSIKASLCCEYKPGLLPKLRQALDALHLKIMMAEIATLGGRMKNVFVIISCKEHNINEDAAYRQFLAVSVHQAIRSLLYRYSCSEDLLGTRKRRRLSIFSSSPFGDFFVMTEGLPDCTDYLNPFHAYDEGNLTWLKHVKEFSKFVEFLQLQAAEAEAATLSMGLDLSPYFLAVTQLKEKERAQPRDYSISWIHANGENAGLPSKSFDIVSIAFVLHECPERAIVNLVKEAFRLLRPGGTIALTDNSPKSKIVQIPPRKSAVSYRADEWDVNKWAWDGVLKVISKGEECIIRLEDKKTDILFFAKKRTKFVLQSGDPAGGRLRHAFIGIGFRERTKAYDFQAALHDPMIYMLLVFQNILFFMIEETTKTVSEDQDCQSPPKDQITEDVPDDDDFGDFQAAG 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0617 549 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 310 424 IPR029063 -
Lele29g0617 549 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 67 116 IPR011598 GO:0046983
Lele29g0617 549 PANTHER TRANSCRIPTION FACTOR BHLH30 33 247 IPR045847 GO:0003700|GO:0006355
Lele29g0617 549 Gene3D - 399 499 IPR011993 -
Lele29g0617 549 Pfam Helix-loop-helix DNA-binding domain 71 116 IPR011598 GO:0046983
Lele29g0617 549 MobiDBLite consensus disorder prediction 519 549 - -
Lele29g0617 549 CDD AdoMet_MTases 312 392 - -
Lele29g0617 549 Pfam Protein of unknown function (DUF1681) 399 494 IPR012466 GO:0006897|GO:0016020
Lele29g0617 549 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 71 120 IPR036638 GO:0046983
Lele29g0617 549 SMART finulus 73 122 IPR011598 GO:0046983
Lele29g0617 549 SUPERFAMILY PH domain-like 400 497 - -
Lele29g0617 549 Gene3D Vaccinia Virus protein VP39 294 398 IPR029063 -
Lele29g0617 549 Pfam Methyltransferase domain 308 390 IPR013216 GO:0008168
Lele29g0617 549 Gene3D - 62 124 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0617 Lele-ChrLele29 3771126 3782038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0617 54 246 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 40.102 2.63e-32 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele29g0617 DUF1681 3.4e-18 CL0266
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0617 29 3771126 3782038 Lele31g0921 31 16617600 16619581 hybridization
Lele29g0617 29 3771126 3782038 Lele32g0604 32 3729955 3735048 hybridization