LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele29g0605	ATGACGTTATGTTGGTCTGACCTTTATGATTCTTCCCCACCAGAGATGCCTTCCGTTGCAAATTTCTCACCCGATGTTGTTGCCACCGCCGTCACTCAGGACCCTTTTTGGGCGGATGAATTCCACGACTTCTCGTCTGCGAGACGCCAGGCCCATCGCCGGTCGGTGAGCAATTCCATTTCCTTCCTCGAGGCTCCCTTGTTGCTGCACGATTGTCATGTTAATAACTCTGGGAATGTCCGACCCAGATTTGAGGCTGAGAATGAGTTTGACAGCATTAATGATGAGAAACAAATCACGAACCAAGTCCAACACCACCATAACCTGCACAAGCAGAACGAAGAATCTCAGCAGAAGCAATTGAAAAATGAATCCGACGAGGTTGAAAATCAAATAAGCAAACAGCAGGGAACACAACCTTCAAATAATACATTACCAACTCCTTCCTCTGACAAGATCACTGATCCTAAGAGGGTCAAAAGAATCTTGGCAAATAGGCAATCTGCACAAAGATCACGGGTGAGAAAACTGCAATACATAATCGAGCTAGAACGTAGTGTAACTACATTACAGGCAGAAGTATCAGTGCTGTCTCCAGGGGTTGCATTTTTAGATCAGCAACGCTTGCTTCTAAATGTTGATAATGGTGCTCTTAAACAACGAATTGCTGCCCTCGCTCAAGACAAAATCTTTAAAGATGCTGTTCAATATACACTTAAGAGGGAGATAGAGAGGCTTAGGCACGTGTATCAGCAACAAAACCTCAAGAACGTGGAATATGTAGCAGGTTCAGTATCTCCTTCACCAAATCCACAATGTCATGTTCTGACTGAACAGGAACTGCTTCTCGACGTTTGA	858	0.4452	MTLCWSDLYDSSPPEMPSVANFSPDVVATAVTQDPFWADEFHDFSSARRQAHRRSVSNSISFLEAPLLLHDCHVNNSGNVRPRFEAENEFDSINDEKQITNQVQHHHNLHKQNEESQQKQLKNESDEVENQISKQQGTQPSNNTLPTPSSDKITDPKRVKRILANRQSAQRSRVRKLQYIIELERSVTTLQAEVSVLSPGVAFLDQQRLLLNVDNGALKQRIAALAQDKIFKDAVQYTLKREIERLRHVYQQQNLKNVEYVAGSVSPSPNPQCHVLTEQELLLDV	285

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele29g0605	285	SUPERFAMILY	Leucine zipper domain	157	211	IPR046347	GO:0003700\|GO:0006355
	Lele29g0605	285	Pfam	Basic region leucine zipper	154	198	IPR004827	GO:0003700\|GO:0006355
	Lele29g0605	285	FunFam	Transcription factor VIP1	156	227	-	-
	Lele29g0605	285	MobiDBLite	consensus disorder prediction	103	158	-	-
	Lele29g0605	285	CDD	bZIP_plant_RF2	158	208	IPR044759	GO:0003700\|GO:0006355
	Lele29g0605	285	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	160	175	IPR004827	GO:0003700\|GO:0006355
	Lele29g0605	285	PANTHER	BASIC LEUCINE ZIPPER 34	13	260	-	-
	Lele29g0605	285	MobiDBLite	consensus disorder prediction	103	129	-	-
	Lele29g0605	285	Coils	Coil	111	138	-	-
	Lele29g0605	285	SMART	brlzneu	153	217	IPR004827	GO:0003700\|GO:0006355
	Lele29g0605	285	Gene3D	-	156	228	-	-
	Lele29g0605	285	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	155	207	IPR004827	GO:0003700\|GO:0006355
	Lele29g0605	285	MobiDBLite	consensus disorder prediction	130	151	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele29g0605	Lele-ChrLele29	3703210	3704779	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele29g0605	13	235	bZIP Transcription Factor Family	AT2G42380	44.610	5.72e-59	187

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Lele29g0605		bZIP_2	4.6e-09	CL0018