Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0604 ATGCAAGGGAATAAGAACGAGACGACACAACATGCAGCATGTGCAGCATGCAAGCACCAAAGAAAGAAGTGCAGCGTACACTGTGCATTAGCACCATATTTTCCGGCAAACAGAAACAGAGAATTCGAAGCAGTCCACAAAGTGTTCGGAGTGAGCAACACGACTAAGTTATTGAAATACACGAAAGAAGAACATCGGAGAAAGCTGGTGGAGTCTTTAATATGGGAAGCATTTTGCAGACAACAGGATCCAATTCTGGGTTCTTATGGACAGTACAAGAAGATTGAGAGTTTCAAATCTGAAGTTGTCATTAATCAGTTTCAACAACACCATCCTGCACCTTACTATTATTCAGGGTCCTGTCCAAGTCCAAATCCAAATCCTTTTTCTTTCTTTTCTTCATTTCCCCAAAACTTGAGAGTGCAAATTATTGATGAAATGTTGCAATCATTCATACCTCTTAGACCTCGCTTTAAGCCTCAGATGGCCTATTCATATCTTCTTTCCTATACTCTTGAAAACTCTGGTCCCCTCCCTCTTGCCCTTGCCATTCTACAACGGACCCTTCGTTCTGGTTGCATTCCTCTTCCTCAAACCCATGTTCTCCTCACATCTGCTTGGTTGAACAAACGACAGCAACGTCATTCTGTTTCTAACATTTTACTTGAGATGCAGTCAATCAGATACCAACCAGACTGCAAGACGTGTAATTATATACTATCATCGCTATGTGCTGTTGATCAATGGATGGAAGCAGTTATAGTTCTGAAAGGCATGAGTGGAGCAGGATGCTTTCCTGATCAAGAGAGTTTACGCCATTTTGATTGGAGCAATGTGCAGGGACAGGGAACACTAAAGAAATTGTTGGCAGAATTACGGGCCAATAGGGAGATATGGAAAGCAGTTGAGATGATTGAGTTCCTGGAGAATGAGGGTTACACTGTCGGATTTGAGAGTTACGAGATGGTGATCAAAGGGTGCTTGGAGAAAACCGAGTATGTTTTTGCTGGAAAAGTTGCAATGAGGACGACAGAAAGAGGTTTTATACCCCATATCAATGTCAGGCTTCAGATAATTGAAGGTTTGGCCAGTCTTGGTGAGTGGCAGATAGCTTCTTCATTGAGGAGAAGATTTGCATCACTTGGATCTTAG 1152 0.4227 MQGNKNETTQHAACAACKHQRKKCSVHCALAPYFPANRNREFEAVHKVFGVSNTTKLLKYTKEEHRRKLVESLIWEAFCRQQDPILGSYGQYKKIESFKSEVVINQFQQHHPAPYYYSGSCPSPNPNPFSFFSSFPQNLRVQIIDEMLQSFIPLRPRFKPQMAYSYLLSYTLENSGPLPLALAILQRTLRSGCIPLPQTHVLLTSAWLNKRQQRHSVSNILLEMQSIRYQPDCKTCNYILSSLCAVDQWMEAVIVLKGMSGAGCFPDQESLRHFDWSNVQGQGTLKKLLAELRANREIWKAVEMIEFLENEGYTVGFESYEMVIKGCLEKTEYVFAGKVAMRTTERGFIPHINVRLQIIEGLASLGEWQIASSLRRRFASLGS 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0604 383 Gene3D Tetratricopeptide repeat domain 141 331 IPR011990 GO:0005515
Lele29g0604 383 Pfam Lateral organ boundaries (LOB) domain 13 97 IPR004883 -
Lele29g0604 383 TIGRFAM PPR: pentatricopeptide repeat domain 235 267 IPR002885 -
Lele29g0604 383 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 96 - -
Lele29g0604 383 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Lele29g0604 383 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 232 266 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0604 Lele-ChrLele29 3697101 3701960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0604 11 95 AS2 family AT1G06280 62.353 5.37e-35 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lele29g0604 LOB 1.7e-29 No_clan