Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0592 ATGGATATGCTGTTGGAGAAGATGGACGACGGAGAAATTTCAAATTTCGGTTTTCCGCATCAGAACCACCCACCAACCGCCGCATCCTCTAACAATACCAATAATCCTCCTCCGATTCTCAAGAGAAAGAGAAACCTGCCAGGAAACCCAGATCCTGAAGCGGAAGTGATAGCCCTATCGCCCAAGACACTAATGGCGACGAACAGATTTCTGTGTGAAATTTGTGGGAAAGGGTTCCAGAGGGATCAAAATCTGCAACTTCATCGACGTGGACATAATCTTCCATGGAAGCTGAAGCAGAGGACAAGTAAAGAAGTGAAAAAGCGAGTGTATGTGTGCCCAGAAAAAAGCTGCGTTCACAACCACCCATCGAGGGCTCTGGGAGATTTGACAGGAATCAAAAAGCACTTCTGCAGAAAGCACGGCGAGAAGAAGTGGAAGTGTGAGAAGTGCTCAAAGCGTTACGCTGTTCAGTCTGATTGGAAAGCCCACTCCAAAACCTGTGGTACTAGGGAATACAAATGTGACTGTGGCACCATCTTTTCACGGAGGGATAGCTTCATCACGCATAGGGCCTTCTGTGATGCCCTAGCAGAAGAAACAGCAAGAGTGAACGCAGCTTCCAACAACATAAGTTACAGTACTATAATTGGAGCTGCTTCTTCCCTAGGACCAAACAACAACATGGCAACCCATTTTCCTTCAATCTTCAAGCCAATTTCAAACACCAATAATACCGAGGAACAAGCAAATAATCAAACGCCTATTAGAGAGCTACCTCTATGGATGGAACATCATCATCAGCAGACAATAATGCCTAGTAATGGAAATATCAGTAACCCTACTCATGATCATCAGAATATTCATCATCATCATCATCAACTTGGGAGCCACCAGCTTGTTTCACATCCACAGCAGCTAAATTGGGTGTTTGGGAACAAGCTCATTTCAAGTTCTTCGGCCTCTTGCCAAGAGCTAGCAAGCACCTCAATTGGAATGATTAGTGTTCCTTCCTTGTATAGCTCCCAACATCATCATCAAACTTACCAAACAACATCGGCAAACATGTCGGCGACGGCGCTGTTGCAGAAAGCTGCTCAGATAGGGGCCACATCGACCACCTGTGACCCCACATTCCTGGGGAGCTTAGGGTTGAAATGTAGCAGTCAAGGTGGTGGTCAAGAAGATGGTCATGGAAGTGATAACAAGTATTATGGGATGTACGGTTCAGGTTCTAGTTCGGTTCTCACCAATTTTGGTGGTGGAGGAAGTGATCAGACGACAGAGAACAACTCGGCTAGTGAAATGTCACAAATGCACCCAGCAAAACGCCCGAGGCAGGTATTACAGAATGAAGAAGGAGGGCAAACTAGGGATTTCCTTGGTGTTGGTGGTGTCCAAACCATTTGCCACCCTTCATCAATCAAAGGATGGGTCTAA 1440 0.4597 MDMLLEKMDDGEISNFGFPHQNHPPTAASSNNTNNPPPILKRKRNLPGNPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVKKRVYVCPEKSCVHNHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVNAASNNISYSTIIGAASSLGPNNNMATHFPSIFKPISNTNNTEEQANNQTPIRELPLWMEHHHQQTIMPSNGNISNPTHDHQNIHHHHHQLGSHQLVSHPQQLNWVFGNKLISSSSASCQELASTSIGMISVPSLYSSQHHHQTYQTTSANMSATALLQKAAQIGATSTTCDPTFLGSLGLKCSSQGGGQEDGHGSDNKYYGMYGSGSSSVLTNFGGGGSDQTTENNSASEMSQMHPAKRPRQVLQNEEGGQTRDFLGVGGVQTICHPSSIKGWV 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0592 479 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 92 IPR013087 -
Lele29g0592 479 MobiDBLite consensus disorder prediction 19 39 - -
Lele29g0592 479 Gene3D Classic Zinc Finger 66 93 - -
Lele29g0592 479 SMART c2h2final6 70 92 IPR013087 -
Lele29g0592 479 SMART c2h2final6 146 166 IPR013087 -
Lele29g0592 479 SMART c2h2final6 111 141 IPR013087 -
Lele29g0592 479 Gene3D Classic Zinc Finger 103 194 - -
Lele29g0592 479 MobiDBLite consensus disorder prediction 418 438 - -
Lele29g0592 479 SUPERFAMILY beta-beta-alpha zinc fingers 69 166 IPR036236 -
Lele29g0592 479 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Lele29g0592 479 FunFam protein indeterminate-domain 12-like 49 117 - -
Lele29g0592 479 MobiDBLite consensus disorder prediction 418 450 - -
Lele29g0592 479 MobiDBLite consensus disorder prediction 14 52 - -
Lele29g0592 479 FunFam protein indeterminate-domain 5, chloroplastic-like 124 203 - -
Lele29g0592 479 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 26 467 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0592 Lele-ChrLele29 3637167 3639300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0592 37 479 IDZ Gene Family AT1G03840 53.958 1.59e-148 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele29g0592 None None None