Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0588 ATGAAGACCGCTTCCCAGTTGGAGATTCTGGAGAAAACTTATGCTACCGAACCGTATCCATCCGAGGCATTGCGAGTAGAGCTATCGGAGAAATTGTGTCTTTCAGATCGTCAACTGCAGATGTGGTTTTGTCACCGCAGGCTGAAAGACAGAAAGGCGCCAGCAGCGAAGAAGCCGGGAAATGAATCGCCACCTGGAGCGGTGACTCCGGCGCCAGTGGCTGATGGTTTTGAGCAGAAGGCAATGGTTGATGGTGGTCATGCGCGCGATTCCATTTCTGGGAAGAGACCATACAGTCATATGGATTCACGGCGGGCTGTTCCACGACCTGGTATGGCCTTTACTAGTATTGGATGGGGATTGCCAGCAATGGAGAGTTACTATGAATCACATCAGTCCAAAGCTAAGCTGAAAGCTATTGCATTTGTGGAAGCACAGTTAGGGGAACCATTAAGAGAGGGCGGGCCAATTTTGGGGATGGAATTTGATCCGTTGCCACCCGGTGCGTTTGGTGCACCAATAGGGCCAACTGCAATGGCGCAGCATCGGCAATCTAGAAGGCCTTTTGAGGCAAAAATTTATGAACGATTGGACAAGGGCGCTTCGAGGACTCTCCATGAATATAAATTTATTCCAGAGCAGCCAACTGTTAGAAATGAGACACATGACTATGAGAGAGTCACCCTTTCTAACCACTATGGTTCTCTTGATGGAATTCCACATGCAAGGACTTCATTATCTAGTGGGCGACAATTCCTTGATGGGAGTGAAATTGCTTCCTATGGTTATGGATATCAAAATCTGATGCCAGGGTTAAATCTTTTGTCTCAGCAAGGTAGGCACAATCATCTTTTACCTTCTGCTTTTAGACAGAATGATAATGCTCCATGGAAAAACACATTGCCTGCTGACTCTCATATTGGAGCTTACCCTGCAGCTCAAATTGATAGCATATCAACTCCATCTGACCAGAATGTTATGCATGAGGAGCAAATTTCACGGTTTCAGAGGAAGCGGAAGAATGAAGAGGCTAGAATGCAGCGGGAACTTGAGGCACAAGAGAAACGGATCAGAAAAGAGCTTGGAAAGCAGGATATTTTAAGGCGAAAGAGAGAGGAGCAAGTGAGGAAAGAGATGGAGAGGCATGAACGTGACAGGCAGAAGGAAGAGGAAATGATATTGCGTGAAAGACAGCGGGAAGAGGAGAGATACCAAAGAGAACAGAGGCGTGAACTAGAGCGGAGGGAGAAGGTTTTGCAGAAAGAGTCAATCAGAGCTGAGAAGAGGAAACAGAAGGAAGAATTACGCAAAGACAAAGAGGCAGCAAGGATCAAAGCAGCCAATGACAGAGCTATTGCTCGCAGAATGGTCAAAGAATCAATGGAACTTATTGAAGATGAACGGCTGGAATTGATGGAGTTAGCTGCATCTGTAAAGGGACTTTCTTCAATTTTGTCCCTTGACTATGAAACTTCACAGAATCTTGAATTATTTAAAGATGGGAGGACTTCATTTCCACCTAAGACTGTGCTGCTGAAAAGACCTTTCTCAATTCAACCTTGGTTGGATTCTGAGGAGAACATAGGAAACCTTTTGATGGTTTGGAGGTTTTTGATCTCCTTTGCTGATGCTCTTGGGATTTGGCCATTCACTTTGGATGAATTTTTACAAGCTTTCCATGACCATGATCCTAGGTTGTTAGGCGAGATTCATATTGCTCTTTTGAGATCTATTATAAAAGATATTGAAGATGTTGCAAGAACTACTGGGGCGGGAGCTAATCATAACAGTGCTGTCAATCCTACTGGGGGTCATCCGCAAGTAGTTGAAGGGGTTAGTGATGGTGAAGATGTTATTTCCAATTTACGTAGTGGGGTGGCAGTTGAAAATGCTGTTGCTATCATGCAAGAAAAGGGTTTATCTAACCCAAGAAAATCTAGGCATCGCTTGACCCCTGGAACTGTTAAGTTTGCTGCATTTCATGTCTTATCTCTTGAAGGAAGTAAGGGCCTTACCATATTGGAAACTGCAGACAAGATTCAGAAATCTGGACTTCGTGATCTTACGACAAGCAAAACACCAGAAGCTTCTATAGCTGCTGCTCTGTCCAGGGACACAAAGCTTTTTGAAAGGACAGCTCCTTCGACATATTGTGTACATGCTGCATATAGAAAGGACCCTGCTGATGGCGAGGCAATCCTCTCAGCTGCCAGGGAAAGAATCAGGATATTAAAAAATGGACTTGTCAATGCAGAAGAACCAGATGATGGTGAAAGGGATGATGAGTCAGAAATTGATATGGCAGAAGATCATGAGGCTGATGATTTAGGTACTGAAACAAATACCAAGGAGGCTTCTGATTTTGTGGAATCTAGTTTGAACACTGTAGTTAAGAATAGAGAAGGCAGTTGTGAAATTTTGCAAACTACTGATGGTGGCAATGGACAAATGAATGAGGGTTTAGCATCAATTGTTGCTGAAGAATTTAATCAGGAAATTGCCGGTAGTAGCAATGTTACTAAACCGGATCTGGAAGACACCAATATGGATGAAAGTAATACAGGTGAACCATGGGTTGAAGGGCTTATTGAAGGAGAATACTCAAATCTTAGTGTGGAAGAGCGACTTAATGCCCTTGTTGCTCTGATTGGTGTGGCAATTGAAGGAAATTCAATCCGTTTTGTTCTTGAGACCCATCTTCAGAGTGTTCCATCAGAAGTGAACATAAAATTGCAAGACTCTGCTGTCCCTGATAATTATTCTTGCCAACAATTTGGTTCCGGTGCTGAAAAATCAAAATCAAATTTCAAGGCATACATTGGTCAATTGGCAGAAGAAACTTATGTTCATAGATCATTGCCTCTTGGTTTGGATCGGAGACATAATCGATACTGGCAGTTCATTGCATGTTCATCTCAAAATGATCCAGGCTGTGGTAGGGTTTTTGTGGAGATGCACGATGGTTGTTGGAGGCTGATTGATTCTGAAGAGGGTTTTGATGCTCTCTTGGCATCATTGAATGTACGGGGGATTAGGGAATCCCATTTGCACATGATGTTGCAACGAATTGAAATGTCCTTCAAGGAATGTGTTAGAAGGAATAAGTTGAGAAGGCAAGATGAAAACCCTGTTAATACAGAAGCTTTTCAGATGGCTACCGAGCATGGTTGCTGTGCTTCCATGTTCGAGACATCAGCATCTTTTGTGGTTCAGCTGGGAAGGAATGATTCTGATAACCAAGATGCTTTGAGGAGATACCAGGACCTTGAAAAATGGATGCTGACGGAAGGCCTAGATTCCTCAGTATTATGTGCGTTGAGGGCTGGGAAGAGAAGGTGCAGTCAATTGCTGGGCATGTGTGATTACTGCCATGAGATCTATCTATCTGAAGAAATTCCATCTCCTGCCTGCTGTAGAATCCTTCGTACTTGTAAGAGCAACTTAAGCTCTTCTGAACATATGGCTCAATGTGAAGGAAAAGTGAAGATTACCAGTGATTATGCATTTAGTGTCTCCCCCTCTTCTCCATTAAGAATGAGATTGCTTAAAGTGCTGTTGTCAATAGTTGAGGTTTCCATTCCTGAAGAAGCTCTTGAACCTATTTGGACAGACTGCTATCGGAAGTCTTGGATTATAAAGCTGCGTGCTGCTTCTTCCTCTGAAGAACTTCTTGAGGTTGTTTATCTTTATTTGATAAACCATGATTTGAAATTTCAAGGCATTAATGCTCTTTGTTGTTTGAGTTTGACCATACTGGAGGGTGCTATCAAGCGGGATTATTTGGCTTCAAACTTCAAGACTACCAGCGAGCTGTTGGGCTCTATTTTTTCTTCTGGATTTCATATTGATTCCATGGGAGCTGAAGGAATTCCTGTGTTGCCGTGGATGCCTCATACAACAGCTGCTGTGGCTCTAAGGCTCATGGAACTTGACATCTCAATCTTTTATACCCTGGAGCAGAAGATGGAGTCTGAAAAGGAGAAGACAAATGAGAATGTTGTGAAATTTCCTTCAAAACATGCTTCTGCCAAAATTGCCCTAGTTGCTGGTACTGCTGAGATTTCACATTTAGCTGGGCATAACATGGTTGATCTGGGTGCTGGATTTGCTAGCTACAGTCGAGGACAAAGGCCCCATGGACGGGGAATAGGTCGCGCTCTTGGCGGGGGATCACTGGGAAGGATCATCAATTCAAGATCTGAATCTAGGCAAAAAGTTACTGCCACTAGCATCAGGAGAGTTGGACAGGGACTAAGATGGAAAGGGAAATCACGAGGTCATGGAGGGCAGCGTTGCACTCGCCGTAGCAAGAAGAAACCAGCAGCTAAAGAGCATGAGATTACTGCTGAGAGGGATGCTCCCAAAGAGTAA 4371 0.4372 MKTASQLEILEKTYATEPYPSEALRVELSEKLCLSDRQLQMWFCHRRLKDRKAPAAKKPGNESPPGAVTPAPVADGFEQKAMVDGGHARDSISGKRPYSHMDSRRAVPRPGMAFTSIGWGLPAMESYYESHQSKAKLKAIAFVEAQLGEPLREGGPILGMEFDPLPPGAFGAPIGPTAMAQHRQSRRPFEAKIYERLDKGASRTLHEYKFIPEQPTVRNETHDYERVTLSNHYGSLDGIPHARTSLSSGRQFLDGSEIASYGYGYQNLMPGLNLLSQQGRHNHLLPSAFRQNDNAPWKNTLPADSHIGAYPAAQIDSISTPSDQNVMHEEQISRFQRKRKNEEARMQRELEAQEKRIRKELGKQDILRRKREEQVRKEMERHERDRQKEEEMILRERQREEERYQREQRRELERREKVLQKESIRAEKRKQKEELRKDKEAARIKAANDRAIARRMVKESMELIEDERLELMELAASVKGLSSILSLDYETSQNLELFKDGRTSFPPKTVLLKRPFSIQPWLDSEENIGNLLMVWRFLISFADALGIWPFTLDEFLQAFHDHDPRLLGEIHIALLRSIIKDIEDVARTTGAGANHNSAVNPTGGHPQVVEGVSDGEDVISNLRSGVAVENAVAIMQEKGLSNPRKSRHRLTPGTVKFAAFHVLSLEGSKGLTILETADKIQKSGLRDLTTSKTPEASIAAALSRDTKLFERTAPSTYCVHAAYRKDPADGEAILSAARERIRILKNGLVNAEEPDDGERDDESEIDMAEDHEADDLGTETNTKEASDFVESSLNTVVKNREGSCEILQTTDGGNGQMNEGLASIVAEEFNQEIAGSSNVTKPDLEDTNMDESNTGEPWVEGLIEGEYSNLSVEERLNALVALIGVAIEGNSIRFVLETHLQSVPSEVNIKLQDSAVPDNYSCQQFGSGAEKSKSNFKAYIGQLAEETYVHRSLPLGLDRRHNRYWQFIACSSQNDPGCGRVFVEMHDGCWRLIDSEEGFDALLASLNVRGIRESHLHMMLQRIEMSFKECVRRNKLRRQDENPVNTEAFQMATEHGCCASMFETSASFVVQLGRNDSDNQDALRRYQDLEKWMLTEGLDSSVLCALRAGKRRCSQLLGMCDYCHEIYLSEEIPSPACCRILRTCKSNLSSSEHMAQCEGKVKITSDYAFSVSPSSPLRMRLLKVLLSIVEVSIPEEALEPIWTDCYRKSWIIKLRAASSSEELLEVVYLYLINHDLKFQGINALCCLSLTILEGAIKRDYLASNFKTTSELLGSIFSSGFHIDSMGAEGIPVLPWMPHTTAAVALRLMELDISIFYTLEQKMESEKEKTNENVVKFPSKHASAKIALVAGTAEISHLAGHNMVDLGAGFASYSRGQRPHGRGIGRALGGGSLGRIINSRSESRQKVTATSIRRVGQGLRWKGKSRGHGGQRCTRRSKKKPAAKEHEITAERDAPKE 1456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0588 1456 Coils Coil 325 363 - -
Lele29g0588 1456 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 1 612 IPR044977 GO:0006357
Lele29g0588 1456 MobiDBLite consensus disorder prediction 837 856 - -
Lele29g0588 1456 SMART HOX_1 1 57 IPR001356 GO:0003677
Lele29g0588 1456 Gene3D - 1 65 - -
Lele29g0588 1456 MobiDBLite consensus disorder prediction 1418 1438 - -
Lele29g0588 1456 Pfam DDT domain 526 581 IPR018501 -
Lele29g0588 1456 SUPERFAMILY Homeodomain-like 3 52 IPR009057 -
Lele29g0588 1456 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 951 1023 IPR028941 -
Lele29g0588 1456 CDD homeodomain 2 52 IPR001356 GO:0003677
Lele29g0588 1456 MobiDBLite consensus disorder prediction 1413 1456 - -
Lele29g0588 1456 ProSiteProfiles DDT domain profile. 525 584 IPR018501 -
Lele29g0588 1456 MobiDBLite consensus disorder prediction 1439 1456 - -
Lele29g0588 1456 Coils Coil 372 450 - -
Lele29g0588 1456 ProSiteProfiles 'Homeobox' domain profile. 1 53 IPR001356 GO:0003677
Lele29g0588 1456 ProSiteProfiles HARE-type HTH domain profile. 653 722 IPR007759 GO:0006355
Lele29g0588 1456 Pfam Homeodomain 3 52 IPR001356 GO:0003677
Lele29g0588 1456 Pfam HB1, ASXL, restriction endonuclease HTH domain 653 720 IPR007759 GO:0006355
Lele29g0588 1456 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 854 893 IPR028942 -
Lele29g0588 1456 SMART testlast3 525 584 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0588 Lele-ChrLele29 3603557 3612891 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0588 1 1337 Homeobox Transcription Factor Family AT1G28420 42.838 0.0 919
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Lele29g0588 WSD 4.7e-14 No_clan