Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0583 ATGGCGCCCGATCCAAACCGTACTGCCGGCAGTGCCAGTGGGAGCGGTACCACCAAAGAAGGCAAAGATGAGGCCTTGGCGAAGAAGAAGGTCGAAAACGAAGATCTGTCGGATGAGGATTTAGCGTTAAAGCAACAGCTGGAATTGTATGTGGAGAGGGTTCAGGATCCAGACCCCGGCTTGCAAAAGGTCGCTCTCGAGAGTATGAGGCAGGAAATTCGTACGTCAACAAGCTCTATGACGTCTGTTCCGAAGCCACTAAAGAATTTGGCAGGAGAAATTGCTCAGGAGTATGCTAAACGACAGAGTGATGAGGCCCCTATCGATGATCTTATGGAGCTTGTGCAACAGATAGTTGCTTTCCACATGAAGCACAATGCAGAACCCGAGGCTGTTGATCTCTTGATGGAGGTTGAAGACCTTGATATGTTGATTGAACATGTCGAGAAGACAAATTTTAAGCGGACTTGCTTGTATCTTACGAGTTCAGCAAGATATCTTCCTGGGCCAGATGATATGTTAGTGTTGGATATCGCATACATGATCTATCTAAAATTTGAAGAATATCCAAATGCACTTCAGATTGCATTGTATCTGGATAACCTGCAGTATGTGAGGCAGGTTTTTACTTATTGTGACGATCTTCTGCGAAAGAAGCAATTTTGTTACATACTTGCTCGACATGGAATTACTTTTGAGCTAGACGAGGAGATGGTTGCTGATGATGATGACCGAGAGGTGCTGCAGGATATCATAAACAACTCCAAGTTAAGTGAAGGATATCTGTCCCTTGCTCGTGATATTGAAGTAATGGAGCCTAAATCCCCTGAAGACATATACAAGGCACACTTGCTTGATGGTCGGGCTAGTGCTGGTGCTAGTGTTGATTCAGCTAGACAAAACCTGGCTGCTACTTTTGTGAATGCATTTGTAAATGCTGGCTTTGGTCAGGATAAGTTGATGACCGTTGCATCAGACTCCTCAAGTGGTGTCTCTTCTGGAAATTGGCTTTTCAAAAATAAGGAACATGGGAAGACTAGTGCAGCAGCAAGTCTGGGTATGATTTTACTTTGGGACGTTGACACCGGACTTGCTCAAATTGACAAGTACTTCCATAGTAATGATACACATGTGATTGCTGGTGCTTTATTGGGAGTGGGAATTGTCAATTGTAGCGTCAAGAATGATTGTGATCCTGCAATGGCACTTTTAGGTGATTACACGGAAAAAGAAGATTCATCAATTAGGATTGGTGCCATTATGGGGTTGGGAATTGCCTATGCAGGTTCTCAGAATGAGCAGTTGCGCTACAAATTGACACCTATACTGAATGATGCTAAAGCTTCACTTGATGTGGTTGCTTTTACTGCAATTTCATTGGGCTTGATCTATGTGGGTTCTTGCAACGAAGAAGTTGCCCAAGCAATTATATTTGCACTAATGGACCGCAGTGAGGCTGACCTGGGAGAGCCCCTCACACGGCTTTTACCTCTTGGCCTTGGCCTTCTTTACCTTGGGAAGCAGGAAAGTGTGGAGGCAACAGCAGAAGTTTCAAAGACCTTTCATGAAAAAATCAGAAAATATTGTGACATGACGCTATTATCATGTGCCTATGCTGGAACTGGAAATGTTCTCAAGGTGCAAAATCTTTTGGGTCATTGTTCGCAACATCTTGATAAAGGTGAAACGCACCAAGGTCCTGCCGTGATTGGAATTGCTATGGTTGCAATGGCTGAAGAATTGGGTCTTGAGATGGCAATTCGATCATTAGAACATCTTCTACAATATGGAGAGCAGAATATCCGCCGAGCAGTGCCTTTGGCACTCGGCCTACTGTGCATATCAAACCCAAAGGTCAATGTGATGGATACCTTGAGCAGGCTGAGCCATGACACTGATTCAGAAGTAGCAATGGCAGCAGTTATCTCCCTGGGTCTAATAGGCGCAGGGACCAACAATGCACGAATTGCTGGCATGCTTCGCAATCTTTCAAGCTATTACTACAAGGACACCAGCCTTCTATTTTGTGTGCGAATTGCCCAAGGTCTTGTACATTTGGGGAAGGGCTTACTAACACTTAATCCATACCATTCTGATCGCTTCCTACTATCACCGACTGCCCTTGCTGGACTGGTTACCATGTTGCATGCATGCCTCGACATGAAAGCCATTGTCTTGGGAAAATATCACTATGTTCTGTACTTCCTCGTTTTGGCAATGCAGCCAAGGATGTTGTTGACTGTGGATGATAGCTTGAAACCTCTGTCTGTGCCTGTTCGTGTGGGTCAAGCTGTAGATGTTGTAGGGCAAGCAGGTCGTCCGAAGACAATCACGGGTTTTCAGACTCACTCTACCCCCGTCCTCCTTGCTGCTGGTGATAGGGCAGAATTGGCCACGGAAAAATATATTCCACTTTCGCCCATTCTTGAAGATCCCGAGAGTCTCGTCGGTGCCGGGAGTTGTATCGAAATTCGACGCCGCGTAAGACAACCATGCCGATTCTGGTTCCGGCCCGACAATGCCGTTTCTTCCGGGGCGCCTGAGCGCAGGATCATAGTCGCGAACAAGTTGCCGAAACGGGCTTATCGGGATGCGAACACCAAGAAATGGAGTTTCGAATTCGATAGTGATAGTTTGGTCCTGCAGCTCAAAGACGGTTTACCCTCCGACGTCGACGTTTTTTATGTGACCAAATGGTTCGCGGTTATATCACGCTCTGCTGATGAGTTCACTCGAGAACGAAGTAATGATCTTCAGAGGGTTTTCCACAATTATGACCCCAGGATTCGTAGTCAAGAGAAGGCAGTAGAGTATGTGCGTGCTGTTAATGCGGCTAAGTTGGAGAAGATTTTTGCAAGACCGTTTATAGGAGCCATGGATGGGCATATAGACGCTGTTTCGTGTATGGCGAAGAACCCTAATCATTTGAAAGGGATTTTCTCCGGTTCGATGGATGGAGATATTCGGCTCTGGGATATGTCTTCAAGGCGTACAGTTTGTCAATTTCCTGGTCATCAAGGTTCTGTACGAGGCCTGACAGTATCTACTGATGGGCGGATTCTTGTATCATGTGGAACTGATTGCACTGTCAGACTTTGGAATGTTCTTGTTGCTGCACCTATAGAGTCAGGTAGCTCAACTGAGAATTCTGCTAAGCCCATCAGTGTTTATATTTGGAAGAATGCATTTTGGGGTGTTGATCACCAGTGGGATGGTGAGCTGTTCGCTACTGTTGGTGCTCAAGTAGATATATGGAACCACAACAGGTCTCAGCCAGTAAACAGTTTTGAATGGGGATCAGATTCAGTAATATCTGTCCGGTTCAATCCTGGAGAACCAAATCTCTTGGCAACATCAGCTAGTGATCGGAGCATAACACTATATGATTTGCGTATGGCTTCCCCTATCAGGAAAATCGTAATGATGACCAAAACTAATTCTTTATCTTGGAACCCAAGAGAGCCATTAAACTTCACTGCTGCAAATGAAGATGGTAATTGCTATAGCTATGATGCTAGGAAACATGATGAAGCCAAATGTGTTCACAAAGATCATGTTTCTGCTGTCTTGGATATTGACTACTCACCAACTGGCCGGGAATTTGTCACTGGATCATATGATAGAACAGTAAGAATTTTCCAGTATAATGGTGGCCACAGCAGGGAGATTTATCATACCAAGAGAATGCAAAGGGTATTCTGTGTTAAATTCAGCTGTGATGCAAGTTATGTGATTTCCGGAAGCGATGACACTAATCTTAGGCTTTGGAAGGCTAGGGCATCAGAACAACTTGGAGTTGTTCTCCCTAGAGAACGGAAGAAGCATGATTATAATGAAGCCCTAAAGAATCGCTACAAGCACCTCCCTGAAGTGAAACGTATTGTGAGGCACAGGCACCTGCCAAAACCAATATTCAAAGCCACTAGTCTCATGCGCGTTATGGCCGATGCTCGGAAAAGAAAAGACGAGAGAAGGAAAGCTCACAGTGCTCCAGGTAGCATCAAAACAGAGCCATTGCGGAAAAGAAGGATCGTCAAAGAAATTGAATAA 4050 0.4506 MAPDPNRTAGSASGSGTTKEGKDEALAKKKVENEDLSDEDLALKQQLELYVERVQDPDPGLQKVALESMRQEIRTSTSSMTSVPKPLKNLAGEIAQEYAKRQSDEAPIDDLMELVQQIVAFHMKHNAEPEAVDLLMEVEDLDMLIEHVEKTNFKRTCLYLTSSARYLPGPDDMLVLDIAYMIYLKFEEYPNALQIALYLDNLQYVRQVFTYCDDLLRKKQFCYILARHGITFELDEEMVADDDDREVLQDIINNSKLSEGYLSLARDIEVMEPKSPEDIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFGQDKLMTVASDSSSGVSSGNWLFKNKEHGKTSAAASLGMILLWDVDTGLAQIDKYFHSNDTHVIAGALLGVGIVNCSVKNDCDPAMALLGDYTEKEDSSIRIGAIMGLGIAYAGSQNEQLRYKLTPILNDAKASLDVVAFTAISLGLIYVGSCNEEVAQAIIFALMDRSEADLGEPLTRLLPLGLGLLYLGKQESVEATAEVSKTFHEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCSQHLDKGETHQGPAVIGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGAGTNNARIAGMLRNLSSYYYKDTSLLFCVRIAQGLVHLGKGLLTLNPYHSDRFLLSPTALAGLVTMLHACLDMKAIVLGKYHYVLYFLVLAMQPRMLLTVDDSLKPLSVPVRVGQAVDVVGQAGRPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSPILEDPESLVGAGSCIEIRRRVRQPCRFWFRPDNAVSSGAPERRIIVANKLPKRAYRDANTKKWSFEFDSDSLVLQLKDGLPSDVDVFYVTKWFAVISRSADEFTRERSNDLQRVFHNYDPRIRSQEKAVEYVRAVNAAKLEKIFARPFIGAMDGHIDAVSCMAKNPNHLKGIFSGSMDGDIRLWDMSSRRTVCQFPGHQGSVRGLTVSTDGRILVSCGTDCTVRLWNVLVAAPIESGSSTENSAKPISVYIWKNAFWGVDHQWDGELFATVGAQVDIWNHNRSQPVNSFEWGSDSVISVRFNPGEPNLLATSASDRSITLYDLRMASPIRKIVMMTKTNSLSWNPREPLNFTAANEDGNCYSYDARKHDEAKCVHKDHVSAVLDIDYSPTGREFVTGSYDRTVRIFQYNGGHSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKARASEQLGVVLPRERKKHDYNEALKNRYKHLPEVKRIVRHRHLPKPIFKATSLMRVMADARKRKDERRKAHSAPGSIKTEPLRKRRIVKEIE 1349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0583 1349 Pfam 26S proteasome non-ATPase regulatory subunit RPN1 C-terminal 768 811 IPR041433 -
Lele29g0583 1349 ProSiteProfiles Trp-Asp (WD) repeats profile. 1182 1223 IPR001680 GO:0005515
Lele29g0583 1349 ProSiteProfiles Trp-Asp (WD) repeats profile. 1225 1266 IPR001680 GO:0005515
Lele29g0583 1349 MobiDBLite consensus disorder prediction 1318 1349 - -
Lele29g0583 1349 Gene3D - 1045 1139 IPR015943 GO:0005515
Lele29g0583 1349 SUPERFAMILY ARM repeat 44 688 IPR016024 -
Lele29g0583 1349 Pfam RPN1 N-terminal domain 47 90 IPR040892 -
Lele29g0583 1349 Pfam RPN1 N-terminal domain 88 284 IPR040892 -
Lele29g0583 1349 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 88 810 - -
Lele29g0583 1349 ProSiteProfiles Trp-Asp (WD) repeats profile. 1096 1138 IPR001680 GO:0005515
Lele29g0583 1349 Pfam WD domain, G-beta repeat 959 992 IPR001680 GO:0005515
Lele29g0583 1349 Pfam WD domain, G-beta repeat 1179 1213 IPR001680 GO:0005515
Lele29g0583 1349 Pfam WD domain, G-beta repeat 1228 1257 IPR001680 GO:0005515
Lele29g0583 1349 Pfam WD domain, G-beta repeat 999 1034 IPR001680 GO:0005515
Lele29g0583 1349 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1002 1035 - -
Lele29g0583 1349 MobiDBLite consensus disorder prediction 1 39 - -
Lele29g0583 1349 SUPERFAMILY WD40 repeat-like 954 1257 IPR036322 GO:0005515
Lele29g0583 1349 Pfam Sof1-like domain 1258 1344 IPR007287 -
Lele29g0583 1349 SMART WD40_4 1089 1129 IPR001680 GO:0005515
Lele29g0583 1349 SMART WD40_4 1216 1257 IPR001680 GO:0005515
Lele29g0583 1349 SMART WD40_4 952 992 IPR001680 GO:0005515
Lele29g0583 1349 SMART WD40_4 1132 1171 IPR001680 GO:0005515
Lele29g0583 1349 SMART WD40_4 995 1034 IPR001680 GO:0005515
Lele29g0583 1349 SMART WD40_4 1175 1214 IPR001680 GO:0005515
Lele29g0583 1349 CDD WD40 956 1257 - -
Lele29g0583 1349 ProSitePatterns Trp-Asp (WD) repeats signature. 979 993 IPR019775 -
Lele29g0583 1349 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 959 995 - -
Lele29g0583 1349 Gene3D - 921 1036 IPR015943 GO:0005515
Lele29g0583 1349 ProSitePatterns Trp-Asp (WD) repeats signature. 1021 1035 IPR019775 -
Lele29g0583 1349 FunFam 26S proteasome non-ATPase regulatory subunit 2 homolog 287 727 - -
Lele29g0583 1349 ProSiteProfiles Trp-Asp (WD) repeats profile. 959 1001 IPR001680 GO:0005515
Lele29g0583 1349 FunFam DDB1- and CUL4-associated factor 13 1049 1295 - -
Lele29g0583 1349 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1182 1214 - -
Lele29g0583 1349 Gene3D - 1140 1275 IPR015943 GO:0005515
Lele29g0583 1349 MobiDBLite consensus disorder prediction 21 39 - -
Lele29g0583 1349 FunFam DDB1-and CUL4-associated factor 13 930 1039 - -
Lele29g0583 1349 PRINTS G protein beta WD-40 repeat signature 979 993 IPR020472 -
Lele29g0583 1349 PRINTS G protein beta WD-40 repeat signature 1021 1035 IPR020472 -
Lele29g0583 1349 PRINTS G protein beta WD-40 repeat signature 1244 1258 IPR020472 -
Lele29g0583 1349 Gene3D - 287 729 IPR011989 -
Lele29g0583 1349 ProSiteProfiles Trp-Asp (WD) repeats profile. 1002 1035 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0583 Lele-ChrLele29 3561353 3574766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0583 849 896 Trehalose Biosynthesis Gene Families AT2G18700 60.417 3.27e-12 69.3