Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0574 ATGGGCAGTTCTGAATGCGCAGAGCACAAGTTCTACGACGATACCCACCAACTCCTCTTCCCAAAGAAATCAATGATCAGGGACATTGACAACTACATGCCACCCAGGAATCTCCTTACTCGCCTTGGAGCCGCTAAAACTGCTATACACGACGTCGCCTATATGTTCACCGACTCCCCGCGGTTTTCTTCTTCCGATGAGACCCTTCTGCGGAAATTCCTTCCCCACAACAACCTCACCGACGAATCCGATGACGACGATCCCGACCCGTACTCCTCCGAACACTTCCGAATGTACGAGTTCAAGGTCCGCCGGTGCAATCGCAGCCGGAGCCACGACTGGACTGACTGCCCCTTTGCTCATCCCGGTGAAAAGGCTCGCCGGCGCGATCCGAGAAAGTACCACTACTCCGGCACTATCTGCTCCGAGTACCGCCGCAGCGGCGCATGTAGACGAGGCGATAGTTGCGAGTTTGCACACGGCGTGTTTGAATGTTGGCTTCACCCAGCAAGGTACAGAACGGAAGCTTGTAAGGATGGTAAGAATTGCAAGCGAAAGGTATGCTTCTTCGCTCACACGCCTTGCCAACTAAGAATTTTGCCGGGGAATTGCTCTTCTTCTTCACCTGATCAAATCTCAGACATCAAGAAGAACAAATTCTTAAAACCCTCATTGGGATCAGACAATAATTGCTGTATGTTTTGTCATCGCTCTGCTAATAATGCTAATTCTTCTCCGACTTCCACTCTCTTCGTGATGTCCCACTTTTCACCACCGTTGTCGCCCCCTGTGTCGCCGATCGAAACAGGAACCTCTTCAAATGGTTTATCACCAATTTCTCGATACAGTGAAAGAATTAACGGATCTGAGGTTTATAATAATAATAATAATAATCAGGGTATGGTCATGAGCTACAGCGATGCTCTCACGGAGTTGATGAGCTCCTTGGAAGTTCTGAATTTCAATGAAGCTTCTTCATCACCACCACCTGAAATTTCTGCAACTGCCACTAATAATAAGTCTTCAAATCTGCACGGGCTTGAAGTTTCTTGCTTTAACTGTGATGATCATCAGCTCATTCCTTCACCTTCTACTTCTCATAAAATTTCCCAGAACCCATTAACAGCTTTATCTGCCTCAAGCAAATTTTCAACTGGAAAATTTTTTAACGAGAGCAGAATCTTTGGTGGTGATGATAATAATGGGTCTTCATGTGCAACTCCAGATCTGGGTTGGGTCAATGACCTGCTGATATAG 1257 0.4694 MGSSECAEHKFYDDTHQLLFPKKSMIRDIDNYMPPRNLLTRLGAAKTAIHDVAYMFTDSPRFSSSDETLLRKFLPHNNLTDESDDDDPDPYSSEHFRMYEFKVRRCNRSRSHDWTDCPFAHPGEKARRRDPRKYHYSGTICSEYRRSGACRRGDSCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHTPCQLRILPGNCSSSSPDQISDIKKNKFLKPSLGSDNNCCMFCHRSANNANSSPTSTLFVMSHFSPPLSPPVSPIETGTSSNGLSPISRYSERINGSEVYNNNNNNQGMVMSYSDALTELMSSLEVLNFNEASSSPPPEISATATNNKSSNLHGLEVSCFNCDDHQLIPSPSTSHKISQNPLTALSASSKFSTGKFFNESRIFGGDDNNGSSCATPDLGWVNDLLI 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0574 418 Gene3D - 130 203 - -
Lele29g0574 418 ProSiteProfiles Zinc finger C3H1-type profile. 136 163 IPR000571 GO:0046872
Lele29g0574 418 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 139 161 IPR000571 GO:0046872
Lele29g0574 418 PANTHER UNKEMPT FAMILY MEMBER 49 417 IPR045234 -
Lele29g0574 418 SUPERFAMILY CCCH zinc finger 134 165 IPR036855 GO:0046872
Lele29g0574 418 SMART c3hfinal6 171 194 IPR000571 GO:0046872
Lele29g0574 418 SMART c3hfinal6 135 162 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0574 Lele-ChrLele29 3494323 3495579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0574 91 203 C2H2 Transcription Factor Family AT5G07500 66.372 2.28e-49 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele29g0574 zf-CCCH 2.5e-08 CL0537