Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0562 ATGGGCTGCATATGTTCCAAGACATCAGCTGTGGAAGACAGCCGGGAAGATTTGACGAAGAAATCATTATCTAGCAAGAGAGGGTCAGAGCTGCGTGTTTCAAGGTTGAATTCCTCTAAAAGAAACGAGGGGGTTTGGGCAACAGATAAGTTAGATGGAAGTGATGTGAAGATTTCATTGATTGACAAGAAAACCAATGGCGCATTTCAGTCGTATGATGATCAAGTGGGGAATAAGGAAATAGAGAAGCCTGAATTAACAGTCCTTAACAATCCCGGTCTTGGAAAGGTTCCAAAGGCTGCAGAAGGAGAGCAAGTTGCAGCGGGATGGCCGAGTTGGCTTTCTTCTGTGGCCGGTGAAGCTATCAAGGGATGGATACCTCGAAGTGCCAATACTTTTGAGAGGTTAAATAAAATTGGCCAAGGAACTTACAGTACCGTTTATAAAGCACGTGATGTGGCTCACGAAAAGATTGTTGCTTTAAAGAGAGTTCGGTTTGATAATCTTGATCCTGAGAGTGTAAAGTTTATGGCAAGGGAAATCCTCCTTCTGCGTAGACTCGACCATCCAAATATTATCAAGTTGGAAGGCTTGATAACATCTCAGACCTCTCGCAGCTTGTACCTCATTTTTGAGTATATGGAGCATGATCTTTCTGGATTAGCATCAAGTCCTGGCATCAAGTTTTCTGAACCACAGGTTAAGTGCTACATGCAACAACTTCTTAGTGGATTGGATCATTGTCATAGTCGTGGTGTCCTCCACCGTGACATAAAGGGCTCAAATCTTCTCATTGACAACAATGGCATCTTAAAAATTGCGGATTTTGGGTTGGCAAGTTTCTTTGACCCCAATCATAGTGTTCCATTGACCAGTCGTGTAGTTACTCTCTGGTATAGACCACCAGAGCTTCTACTTGGAGCATCTCATTATGGAGTCGCGGTAGATTTGTGGAGCACTGGTTGCATACTTGGGGAACTATATACTGGAAGGCCTATATTGCCAGGAAAAACTGAGGTTGAGCAACTGCACAGGATTTTCAAGCTTTGTGGATCGCCATCTGAGGACTATTGGCTTAAACAGCGATTGCCACATGCTGCAGTATTCAGGCTTCCTCACCGATACAGAAAATGTATTACAGAAACATTTAAAGAATATCCATCTGCTTCGGTGAGACTTATGGAGACCCTACTTTCTATAGATCCTGCACAACGAGGGACAGCAGCAAGTGCTCTTAAAAGTGAGTTCTTCACTACAGATCCCCTTGCTTGTGATCCATCAAGTTTACCAAAGTATCCTCCCAGCAAAGAGATTGATTCTAAATTACGGTATGAAGAAACCAGAAGGCAAGCAGTTAGAAAAGAAAAGGAACCCGGGGTAACTATTCCATCAAACCACAATGTCGTTGGCCCACGCGTATCCTCACAGGCAATCTCACGCATATCAACACAGCAAGGAGGACAACATTCCAATTCAAAGAGCCGAAGTGAAGTGTTTAACAACAACCCCCACAGAGAACCTGTTTCTGGATTTTGGGTTTATCCCCCACAAAAACAGTCACATGTTAAAGAAATGGAAAATAATTTCAGTGGACCTCTTTATCAGAGGCCTTCACATTCAGGTCCACTGGTTCCTGGTATTCAATTAGCAGCAAGGTGTGGAAAGGAAGTTGATGAAGGGCCTCTTGGTTCCAACAGAGTCAACTTGTCAAAACTATCTGGTTTAGTTGCCTCCAGGACTACATCATCTGAAGATCATGAGGAAAAAACAATTTCCTTGCTGCCCAGAAAAACAATTGAAGTTAGAAAATCTGTGGAGTCAACTAATGCGTCAGAGTCAAGAAGGCATGATAGAAAACGCCATTCCCCTCGAATTGTGGATCTTAGTCAGATAGAAAATGCAAGAGGCTTTACTCAAGAATTGACTCCGGGAGGCCGTGGTGGATACACAGAAAACAAGATATATCTCTCTGGTCCATTACTAGCTTCTTCAAACAACATGGATCAGATGCTTAAAGAGCATGATCGAAAGATCCAAGAATTTTCAAGACGAGCACGAATTGACAAGTCAAGAGGTGGGAAAATTCGTGCACAGAGAAAGTAG 2103 0.4303 MGCICSKTSAVEDSREDLTKKSLSSKRGSELRVSRLNSSKRNEGVWATDKLDGSDVKISLIDKKTNGAFQSYDDQVGNKEIEKPELTVLNNPGLGKVPKAAEGEQVAAGWPSWLSSVAGEAIKGWIPRSANTFERLNKIGQGTYSTVYKARDVAHEKIVALKRVRFDNLDPESVKFMAREILLLRRLDHPNIIKLEGLITSQTSRSLYLIFEYMEHDLSGLASSPGIKFSEPQVKCYMQQLLSGLDHCHSRGVLHRDIKGSNLLIDNNGILKIADFGLASFFDPNHSVPLTSRVVTLWYRPPELLLGASHYGVAVDLWSTGCILGELYTGRPILPGKTEVEQLHRIFKLCGSPSEDYWLKQRLPHAAVFRLPHRYRKCITETFKEYPSASVRLMETLLSIDPAQRGTAASALKSEFFTTDPLACDPSSLPKYPPSKEIDSKLRYEETRRQAVRKEKEPGVTIPSNHNVVGPRVSSQAISRISTQQGGQHSNSKSRSEVFNNNPHREPVSGFWVYPPQKQSHVKEMENNFSGPLYQRPSHSGPLVPGIQLAARCGKEVDEGPLGSNRVNLSKLSGLVASRTTSSEDHEEKTISLLPRKTIEVRKSVESTNASESRRHDRKRHSPRIVDLSQIENARGFTQELTPGGRGGYTENKIYLSGPLLASSNNMDQMLKEHDRKIQEFSRRARIDKSRGGKIRAQRK 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0562 700 Gene3D Phosphorylase Kinase; domain 1 120 215 - -
Lele29g0562 700 CDD STKc_CDK9_like 133 417 - -
Lele29g0562 700 MobiDBLite consensus disorder prediction 450 511 - -
Lele29g0562 700 ProSitePatterns Protein kinases ATP-binding region signature. 139 162 IPR017441 GO:0005524
Lele29g0562 700 SMART serkin_6 133 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele29g0562 700 MobiDBLite consensus disorder prediction 467 503 - -
Lele29g0562 700 Gene3D Transferase(Phosphotransferase) domain 1 216 457 - -
Lele29g0562 700 ProSitePatterns Serine/Threonine protein kinases active-site signature. 253 265 IPR008271 GO:0004672|GO:0006468
Lele29g0562 700 MobiDBLite consensus disorder prediction 602 622 - -
Lele29g0562 700 MobiDBLite consensus disorder prediction 678 700 - -
Lele29g0562 700 FunFam probable serine/threonine-protein kinase At1g54610 216 457 - -
Lele29g0562 700 SUPERFAMILY Protein kinase-like (PK-like) 126 423 IPR011009 -
Lele29g0562 700 FunFam probable serine/threonine-protein kinase At1g54610 120 215 - -
Lele29g0562 700 PANTHER CELL DIVISION PROTEIN KINASE 131 422 - -
Lele29g0562 700 ProSiteProfiles Protein kinase domain profile. 133 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele29g0562 700 Pfam Protein kinase domain 133 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele29g0562 700 MobiDBLite consensus disorder prediction 678 692 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0562 Lele-ChrLele29 3403813 3408175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0562 125 456 Core Cell Cycle Gene Families AT5G10270 48.000 4.25e-111 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lele29g0562 Pkinase 3.6e-67 CL0016