Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0553 ATGGCTGCTTTAGATCAGTATTTTGAGGAGGCCGTGTCCCAAACTGATTCCTTTGGTGAAGATAACTCTTATTCAGAAAAGTGGGAATCTGGTGCAGATTCTGATAGAAATGACTCTAATGGCTTTGACTGCAATATCTGCTTGGACTGTGTGCAAGATCCAGTGGTCACTCTTTGTGGTCATCTCTACTGCTGGTCCTGCATTTACAAATGGTTTCATTTTCACAATCTTTCCAACGTTGAAAATGGCGAAGAACAGAGTCCGCCAGAGTGTCCGGTATGTAAAACAGAAGTTTCCCAATCCTCGCTGGTTCCAATCTATGGCCGAGGCCAAACCACAAACCCTTCCTCAGGCAAGTCCCACCATGTGAGTACTATGATCCCACAAAGACCACATGGACCTTTGTCCGTGTTTGATCCTCGAAGATCGTTTAATGCAACCACCAGTGCAGTTCCACACCGGTCTTCCCAATATTATCATAGTCATTATCCTTATTATCATCATCCTCAACAGTTCAACTCAATCCCTAGTAGTTCCAACTCAGGAATGCTTGGCATGGGCATGGATGGTGCACTAAGAAACGCATTTGACTCAAGAATTGGTGTGTTTGGCGAGATGATATATGCAAGAGTGTTTGGGAACCAAGTGACCGACGTATATTCTTACCCTAATACATATAATCTAGCAGGGAACAGTAATCCAAGGATCAGAAGGCATTTGATGCAAGCTGACAAGCAACTCAATAGAATCTGCTTTTTCCTGCTCTGTTCTTTAGTTCTGTGTCTTCTCTTATTCTGA 798 0.4336 MAALDQYFEEAVSQTDSFGEDNSYSEKWESGADSDRNDSNGFDCNICLDCVQDPVVTLCGHLYCWSCIYKWFHFHNLSNVENGEEQSPPECPVCKTEVSQSSLVPIYGRGQTTNPSSGKSHHVSTMIPQRPHGPLSVFDPRRSFNATTSAVPHRSSQYYHSHYPYYHHPQQFNSIPSSSNSGMLGMGMDGALRNAFDSRIGVFGEMIYARVFGNQVTDVYSYPNTYNLAGNSNPRIRRHLMQADKQLNRICFFLLCSLVLCLLLF 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0553 265 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 112 IPR013083 -
Lele29g0553 265 CDD RING-HC_AtRMA_like 42 95 - -
Lele29g0553 265 ProSitePatterns Zinc finger RING-type signature. 59 68 IPR017907 -
Lele29g0553 265 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 6 262 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lele29g0553 265 SMART ring_2 44 94 IPR001841 -
Lele29g0553 265 MobiDBLite consensus disorder prediction 13 35 - -
Lele29g0553 265 Pfam Zinc finger, C3HC4 type (RING finger) 44 94 IPR018957 GO:0046872
Lele29g0553 265 ProSiteProfiles Zinc finger RING-type profile. 44 95 IPR001841 -
Lele29g0553 265 SUPERFAMILY RING/U-box 33 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0553 Lele-ChrLele29 3348670 3349467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0553 33 265 C3H Transcription Factor Family AT4G28270 38.397 1.40e-43 145