Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0546 ATGGATAGATTCATTAAAAGTGTTGATGGCACTGAAATGAGAGAAAGTCCAGATTGGAGCTTTCAGGGGCAACAATGGAAGCCAGTTTATGATGAAGCTTCCATGTCTGATAGGCCTGAGAGTCAGATCCTATATGATCCCTCTGTTTCTGTCAATGTGCCTCCACCCTCTTCATCGTCATCTTCAAGTATCAGACTTCCCTTTGCCCTTGACGAGTCTCCCTACCAATCTGCAGACACAAATCATCAACCCATAAGGTCTTTTGCACTTGATCATCACCATCATCATCATCAGCAGCAGCATATTCGGCCCCTACACACTACAAAGCTATACAGAGGAGTTAGGCAACGCCATTGGGGAAGATGGGTGGCTGAGATTCGTCTTCCTAACAGTAGAAATCGCCTCTGGTTAGGCACATTTGACACTGCAGAAGATGCTGCTCTGGCTTATGATCGCGAGGCCTTTAAGCACAGAGGACAGAATGCTAGGCTCAATTTCCCAGACCTCTTTCTCAATAAAGCTGCAAATTCAACTGCTTCTTCTTCTTCTTCTTCTTCTTCTTCAAAGCAGCCTGAACCAGAGGAAGAGAACCGTGAGGTTCAGGAAACTGCAGAGGCAGAGAAATTGGTTGTGGGAGAAATGGAGGCTTGGTACAGGGCGATTCCACAAGGTTGGGGACCTGAGAGCCCAGTGTGGGATGATTTAGACACCACCAACAATCTTCTGTTTCAGTCACAGTTTGCTGTTGTGAATCAAAACCAGCAAGAGTTTGATGGTGTTAATAATAATGCTCAGAGACAAGAAGACAAGACAGGACCAGATTATTGTTCCGCTTCATCCTCTGCTTGTCTCATGCAGCCTTTCTTCTGGAACGATTAA 879 0.4562 MDRFIKSVDGTEMRESPDWSFQGQQWKPVYDEASMSDRPESQILYDPSVSVNVPPPSSSSSSSIRLPFALDESPYQSADTNHQPIRSFALDHHHHHHQQQHIRPLHTTKLYRGVRQRHWGRWVAEIRLPNSRNRLWLGTFDTAEDAALAYDREAFKHRGQNARLNFPDLFLNKAANSTASSSSSSSSSKQPEPEEENREVQETAEAEKLVVGEMEAWYRAIPQGWGPESPVWDDLDTTNNLLFQSQFAVVNQNQQEFDGVNNNAQRQEDKTGPDYCSASSSACLMQPFFWND 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0546 292 SUPERFAMILY DNA-binding domain 110 168 IPR016177 GO:0003677
Lele29g0546 292 CDD AP2 109 169 IPR001471 GO:0003700|GO:0006355
Lele29g0546 292 SMART rav1_2 110 173 IPR001471 GO:0003700|GO:0006355
Lele29g0546 292 Pfam AP2 domain 111 157 IPR001471 GO:0003700|GO:0006355
Lele29g0546 292 ProSiteProfiles AP2/ERF domain profile. 110 167 IPR001471 GO:0003700|GO:0006355
Lele29g0546 292 MobiDBLite consensus disorder prediction 177 204 - -
Lele29g0546 292 MobiDBLite consensus disorder prediction 1 25 - -
Lele29g0546 292 PRINTS Ethylene responsive element binding protein signature 111 122 IPR001471 GO:0003700|GO:0006355
Lele29g0546 292 PRINTS Ethylene responsive element binding protein signature 133 149 IPR001471 GO:0003700|GO:0006355
Lele29g0546 292 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 22 199 - -
Lele29g0546 292 Coils Coil 250 270 - -
Lele29g0546 292 Gene3D AP2/ERF domain 110 168 IPR036955 GO:0003700|GO:0006355
Lele29g0546 292 FunFam Ethylene-responsive transcription factor 2 109 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0546 Lele-ChrLele29 3308970 3309848 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0546 99 236 AP2-EREBP Transcription Factor Family AT4G28140 58.273 1.79e-49 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele29g0546 AP2 4.3e-12 CL0081