Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0502 ATGAGGAATCCACGCAGTGACACGAATGGGTTGAAGAAAGGCACATGGACGCCAGAAGAAGACCGCAAGCTCATGGCTTACGTTACTAGGTATGGCTGTTGGAATTGGCGCCAAATCCCCAGGTTTGCAGGTTTAGCAAGGTGTGGGAAGAGTTGCAGACTGAGGTGGCTCAATTACCTGAGGCCCGGCATCAAAAGAGGAAACTATACTCAGGAAGAAGACGACCTTATCATCAAATTCCACGGCCAGCTTGGTAGCAGATGGTCTGCTATAGCGGCTAAGCTACCGGGAAGAACAGACAATGAGATAAAGAACCACTGGCACACCAACCTCAAGAACAAGCACCAAAGTCAACCTCAAAACAACTCTGTCCCAAATGACAAGAATGAAATGATCTCGAAGCCGAGCAACCATCATTTTCAAGGAATCACTGATTCAGTAACTTCGGGCGAATCCTCGGACATAACGACGACGTCGGAGAGTAACCAGGATGTGGTGGTAGGAGATTATGAGTTATCTTTTCTGGATGCATATAATGAGCCAGTGAGCGAAAATTTCTGGACAGACCCATTCGTGGTCGAATCTGACATTACCTGCTACCGCCATACAGAATTACTGTCACCCGCGGAGCTTGAAACTCAAGTTTTTACTCCAATGTCCAATATTGCACAACTTTGGACTCACAATAATTTCTGCGTCTAA 702 0.4658 MRNPRSDTNGLKKGTWTPEEDRKLMAYVTRYGCWNWRQIPRFAGLARCGKSCRLRWLNYLRPGIKRGNYTQEEDDLIIKFHGQLGSRWSAIAAKLPGRTDNEIKNHWHTNLKNKHQSQPQNNSVPNDKNEMISKPSNHHFQGITDSVTSGESSDITTTSESNQDVVVGDYELSFLDAYNEPVSENFWTDPFVVESDITCYRHTELLSPAELETQVFTPMSNIAQLWTHNNFCV 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0502 233 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Lele29g0502 233 CDD SANT 15 60 IPR001005 -
Lele29g0502 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 64 IPR017930 -
Lele29g0502 233 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 162 - -
Lele29g0502 233 MobiDBLite consensus disorder prediction 112 162 - -
Lele29g0502 233 CDD SANT 68 111 IPR001005 -
Lele29g0502 233 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Lele29g0502 233 MobiDBLite consensus disorder prediction 110 162 - -
Lele29g0502 233 Gene3D - 68 139 - -
Lele29g0502 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Lele29g0502 233 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Lele29g0502 233 SMART sant 12 62 IPR001005 -
Lele29g0502 233 SMART sant 65 113 IPR001005 -
Lele29g0502 233 FunFam MYB-related transcription factor 12 65 - -
Lele29g0502 233 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Lele29g0502 233 Pfam Myb-like DNA-binding domain 66 111 IPR001005 -
Lele29g0502 233 Gene3D - 12 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0502 Lele-ChrLele29 3034299 3035221 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0502 2 198 MYB Transcription Factor Family AT1G06180 47.783 2.63e-55 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele29g0502 Myb_DNA-binding 9.9e-14 CL0123