Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0497 ATGAAGAACTGCGAGCTGTGCAGGACTCCGGCTAGGACATACTGTGAATCGGATCAGGCTTGTTTATGTTGGGACTGCGATGCCAAGGTTCACGGAGCTAATTTCTTGGTTGCCAGGCACTCCAGGACCCTCCTATGTCATGCGTGCCAGTCTCCAACGCCATGGAAAGCCACCGGTGCTGTTCTCGGAAACACCGTTTCGGTTTGCCGTAACTGTGACGGATCGGTGTACTTAAGCGGTGAGGATGGCGAGGAAAGCGAAGGAGGCAATGACACCGAAATGAACTCGGATGATGAAGGCGACGATGCCATGCTTGACGAAAACAACGACGATGACGATGACTCCGACGCCGATGAGGGAGGCGGTGATGTGGAGGCAGATCATCAAATAGTCCCTTGGTCCTCCACGACGCCCCCACCGCCTGCAAGTTCTTCGAGCAGCGATGAGTCTAATAACTGCAATAGAAATGTCTCTGAAATAGGGACTACAGTTTCCTTGAAACGAAGGCGTGCAAATGCATCCAAGCATAATTTCCAGGCATATCCTAAACGCTATGGATTAGTACTAGGATTAATTAATGGTCGTTTTCTCAATTTGTCAGGGAGAGTAAAGACGAGGATGAATGACTTGCTTTGCGTTTTGGACGGCTTCAAACCTCCGACATGTGACCATGTCCCTGTTATTCCGCTTTAA 693 0.4993 MKNCELCRTPARTYCESDQACLCWDCDAKVHGANFLVARHSRTLLCHACQSPTPWKATGAVLGNTVSVCRNCDGSVYLSGEDGEESEGGNDTEMNSDDEGDDAMLDENNDDDDDSDADEGGGDVEADHQIVPWSSTTPPPPASSSSSDESNNCNRNVSEIGTTVSLKRRRANASKHNFQAYPKRYGLVLGLINGRFLNLSGRVKTRMNDLLCVLDGFKPPTCDHVPVIPL 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0497 230 MobiDBLite consensus disorder prediction 84 121 - -
Lele29g0497 230 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 170 - -
Lele29g0497 230 CDD Bbox1_BBX-like 4 45 - -
Lele29g0497 230 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270
Lele29g0497 230 SMART bboxneu5 1 45 IPR000315 GO:0008270
Lele29g0497 230 Pfam B-box zinc finger 2 42 IPR000315 GO:0008270
Lele29g0497 230 MobiDBLite consensus disorder prediction 80 161 - -
Lele29g0497 230 MobiDBLite consensus disorder prediction 140 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0497 Lele-ChrLele29 2999917 3002013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0497 2 142 C2C2-CO-like Transcription Factor Family AT4G27310 47.853 1.00e-33 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele29g0497 zf-B_box 4.5e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g0900 11 9262193 9263579 Lele29g0497 29 2999917 3002013 CCT
Lele12g0328 12 3293662 3294401 Lele29g0497 29 2999917 3002013 CCT
Lele29g0497 29 2999917 3002013 Lele32g0472 32 2946313 2948702 hybridization