Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0493 ATGGCGGGGAAGATTGGGTTTGAAGACTTGCTGCCTGTGATGGTTAATAAACTCGGAGGAGAAGGTCTGATAAAGGAGCTGTGTAATGGGTTTGAGTTGCTGATGGACAGAGAGAAACGGGTCATCACTTTGGATAGCTTGAGGAGAAACTCTGCTCTTCTGGGTCTGCAGGACTTGCAGGAGGATGAGCTCGTGACCATGATGAAGGAAGGCGAACTCGACGGCGACGGTGCTCTCTCTCAGATGGAGTTCTGCGTTCTCATGTTTAGATTAAGCCCTGATTTGATGGACCAATCTTGGGTTTTGCTCCGATGA 315 0.4921 MAGKIGFEDLLPVMVNKLGGEGLIKELCNGFELLMDREKRVITLDSLRRNSALLGLQDLQEDELVTMMKEGELDGDGALSQMEFCVLMFRLSPDLMDQSWVLLR 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0493 104 PANTHER CALCIUM-BINDING PROTEIN KIC 4 103 IPR044205 GO:0005509
Lele29g0493 104 SUPERFAMILY EF-hand 3 88 IPR011992 -
Lele29g0493 104 ProSiteProfiles EF-hand calcium-binding domain profile. 59 94 IPR002048 GO:0005509
Lele29g0493 104 Gene3D - 5 102 - -
Lele29g0493 104 Pfam EF-hand domain pair 38 90 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0493 Lele-ChrLele29 2971317 2971631 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0493 7 103 EF-hand Containing Proteins AT4G27280 68.367 1.06e-41 132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0493 29 2971317 2971631 Lele09g0891 09 7320297 7323683 CCT
Lele29g0493 29 2971317 2971631 Lele10g0821 10 6646597 6649745 CCT
Lele29g0493 29 2971317 2971631 Lele11g0898 11 9179746 9182452 CCT
Lele29g0493 29 2971317 2971631 Lele12g0434 12 12111382 12113790 CCT
Lele29g0493 29 2971317 2971631 Lele29g0493 29 2971317 2971631 ECH
Lele29g0493 29 2971317 2971631 Lele32g0466 32 2918793 2927104 hybridization