Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0463 ATGGCTGACATGAACCGCGCTTCTGATGATGTTTCTGCAGATTCTACAGAGCAAACCAGTCAAGCTTCCAAGGCTGATTTTTCTGAAGATGAGGAAACCCTTATAACCAGGATGTACAATCTGGTTGGTGAGAGGTGGTCTTTGATTGCTGGAAGAATCCCTGGAAGAACAGCAGAAGAAATAGAAAAGTACTGGACTTCAAGATGCTCAACCAGTGAATAA 222 0.4324 MADMNRASDDVSADSTEQTSQASKADFSEDEETLITRMYNLVGERWSLIAGRIPGRTAEEIEKYWTSRCSTSE 73
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0463 73 MobiDBLite consensus disorder prediction 1 29 - -
Lele29g0463 73 SUPERFAMILY Homeodomain-like 24 68 IPR009057 -
Lele29g0463 73 SMART sant 23 71 IPR001005 -
Lele29g0463 73 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 22 69 - -
Lele29g0463 73 CDD SANT 27 65 IPR001005 -
Lele29g0463 73 Gene3D - 26 73 - -
Lele29g0463 73 ProSiteProfiles Myb-like domain profile. 19 69 IPR001005 -
Lele29g0463 73 Pfam Myb-like DNA-binding domain 26 66 IPR001005 -
Lele29g0463 73 MobiDBLite consensus disorder prediction 9 23 - -
Lele29g0463 73 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 73 IPR017930 -
Lele29g0463 73 FunFam MYB-like transcription factor 26 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0463 Lele-ChrLele29 2834820 2835420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0463 19 70 MYB Transcription Factor Family AT5G14750 44.231 6.96e-15 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele29g0463 Myb_DNA-binding 1.7e-08 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0463 29 2834820 2835420 Lele31g1082 31 17634502 17635100 hybridization
Lele29g0463 29 2834820 2835420 Lele32g0443 32 2798656 2800814 hybridization