Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0454 ATGGTGAGGTTACTATTCCTCCTGTTCTTCTGCCTGTGGATTTCCTCACAAGTGGTGGCTAGAACCGGAAATACCATTACAAACAAGCCTATAGTTCCTCCGAGGCCAAGCGTCGTGAGAATCGGTGCACTGTTTACTTTCGATTCGGTCATTGGAAAATCAGCTAAACCTGCAATTTTAGCTGCCGTAGATGATGTTAATATTGATACAAGCATTCTTCCTAGTACTAAAATGGAAGTTGTTTTACATGATACAAACTGCAGCGGGTTTCTCGGCACAGTGGAAGCTCTGCAGTTGATGGAGAATGATGTGGTTGCTGCCATTGGTCCACAGTCATCTGGAATAGCTCATGTCATCTCTCATGTTGTTAATGAACTCCATGTGCCTCTTCTCTCATTTGGGGCCACAGACCCTACTCTTGCTTCACTGCAGTACCCGTATTTTGTCCGCACTACCCAGAACGACTATTTTCAGATGAACGCGATTGCAGACTTGGTTGACTACTTTGGTTGGAAGGAGGTGATTGCCATCTTTGTAGATGATGATAATGGAAGAGGTGGAATTTCAGCTCTAGGCGATGCGCTTGCAAAGAAGCGTGCCAAGATCTCTTATAAGGCTGCCCTTACTGCTGGAGCCTCTGCAAGTAATATCAGTGACTTGTTAAATGGGGTCAACTTAATGGAATCACGGGTTTATGTTCTCCATGTTAACCCTGATACTGGTTTGTCCATTTTTTCTATAGCGAACAAAATCGGTATGCTGGGAAGTGGTTATGTTTGGATTGCTACAGATTGGCTTCCTTCGGTTCTAGATGCATCAGAACCAGTTAATCCTGACACAATGAATGTCTTACAAGGGGTTATCGCCTTACGCCATCATACTCCTGACACTGATCTCAAGAAAAGGTTTATCTCTAGGCTGAAAAACAGTAAAGATAAGGACACTACAAGCTTTAATTCATATGCATTATATGCATATGATTCAGTGTGGTTAGCGGCACGTGCTCTTGATGCTTTTCTTAATGAAGGTGGAAATGCATCTTTCAGTAGTGACCCCAGGTTGCATGACACAAATGGAAGCATGTTGCATTTAGCATCACTTCGTACTTTTGATGGTGGCTCGCAGTTTCTCGAGAAAGTCCTGTCTATGAACTTCACTGGTCTGAGTGGTGAAATTCAGTTTGATGGGGACAAGAACTTAATTCGTCCAGCGTATGATATTCTAAACATCGGTGGATCTAGCCGTAGAATTGGTTATTGGTCTAATTACTCTGGCCTGTCAGTTGTAGCACCTGAAATTTTATATACAAAACCACCAAACACTTCATCTAGCAATCAGCATCTTTTCGGGGTGATATGGCCGGGAGAGACTACGGTAATACCCCGGGGATGGGTGTTTCCCAACAACGGAAAGCCACTGCGAATAGCAGTACCGAACCGAGTAAGCTATCAAGAGTTTGTTTCCAGAAACAAGGACCCCCCAGGAGTAAGGGGTTATTGCATTGATGTCTTTGAAGCAGCCATAAACCTGCTGCCATATCCTGTCCCGCGACAATATATATTATATGGAGATGGTCTTAGAAATCCCAACTACAATGCACTCACTGATGCAGTTGCACAAAATAATTTCGATGCAACCGTTGGAGATGTTACAATTGTCACAAACAGGACAAGGATTGTGGATTTTACTCAACCTTTCATGGAATCAGGGTTGGTTGTAGTTGTTGCTGTCAAGGAGGAGAAGTCAAGCCCTTGGTCATTTCTCAAGCCATTCAATGCACAAATGTGGTGTGTCACCGGTGCCTTCTTTCTCTTCGTGGGAGCCGTGGTATGGATTCTTGAGCATCGGCTCAATCACGAGTTCCGTGGTTCTCCAAGGAAACAACTTATGACCATTTTTTGGTTTAGCTTCTCAACAATGTTTTTCTCACACAGAGAAAACACTGTGAGCACTTTGGGGAGGTTGGTGTTACTTATATGGCTTTTCGTGGTGTTAATCATCAATTCAAGCTACACTGCTAGCTTGACATCGATCCTCACGGTACAGCAGCTATCATCTCAAATTGAAGGAATTGACAGCTTGATTTCGAGTACTCAACCTATTGGAATTCAAGACGGGTCATTTGCGCGAAAGTATCTGATGAATGAGCTGAATATAGCTGAATCTAGGATAGTGACTTTGAAAAGCCAGCAGGATTACATTGATGCCCTTCAACGTGGACCAAACGGTGGAGGGGTGGCGGCAATTGTCGACGAGCTTCCTTATATTGAGATATTAATGTCTAGCACTAACTGTAAATTCAGAACTGTAGGCCAGGAGTTCACTAAAAGTGGATGGGGATTTGCATTCCAAAGGGACTCTCCCCTTGCTGTGGACTTGTCAACTGCCATTCTTCAACTGTCGGAGAACGGCGACTTGCAAAAGATCCACGACAAATGGCTCTCAAAATTTACCTGTTCTGCACAAGTCAACGACGTTGACTCAAACCAGCTATCTCTCAACAGCTTCTGGGGCCTGTTTCTCATATGTGGGATTGCATGTTTCCTTGCTCTAGTTATATTCTCTATCAGGGTGTTCTGTCAATATATGAAATTTATCCCAGACAGTGATGAGGATGCTGAAGAGCATATTGAGCAGCCTGCCAGTGCTAGAAGGACAATCAGATCCTCTACCAGCTTCAAGAACTTGATTGATTTTGTAGATAAAAAGGAAGCCGAAATAAAGGAGATTTTGAGGGACAAGACCAAGAAACGACGGCGCAGCGAGAGCTTAGAGGGGCGCTCCAATTATTCAAACAGCTAA 2802 0.4375 MVRLLFLLFFCLWISSQVVARTGNTITNKPIVPPRPSVVRIGALFTFDSVIGKSAKPAILAAVDDVNIDTSILPSTKMEVVLHDTNCSGFLGTVEALQLMENDVVAAIGPQSSGIAHVISHVVNELHVPLLSFGATDPTLASLQYPYFVRTTQNDYFQMNAIADLVDYFGWKEVIAIFVDDDNGRGGISALGDALAKKRAKISYKAALTAGASASNISDLLNGVNLMESRVYVLHVNPDTGLSIFSIANKIGMLGSGYVWIATDWLPSVLDASEPVNPDTMNVLQGVIALRHHTPDTDLKKRFISRLKNSKDKDTTSFNSYALYAYDSVWLAARALDAFLNEGGNASFSSDPRLHDTNGSMLHLASLRTFDGGSQFLEKVLSMNFTGLSGEIQFDGDKNLIRPAYDILNIGGSSRRIGYWSNYSGLSVVAPEILYTKPPNTSSSNQHLFGVIWPGETTVIPRGWVFPNNGKPLRIAVPNRVSYQEFVSRNKDPPGVRGYCIDVFEAAINLLPYPVPRQYILYGDGLRNPNYNALTDAVAQNNFDATVGDVTIVTNRTRIVDFTQPFMESGLVVVVAVKEEKSSPWSFLKPFNAQMWCVTGAFFLFVGAVVWILEHRLNHEFRGSPRKQLMTIFWFSFSTMFFSHRENTVSTLGRLVLLIWLFVVLIINSSYTASLTSILTVQQLSSQIEGIDSLISSTQPIGIQDGSFARKYLMNELNIAESRIVTLKSQQDYIDALQRGPNGGGVAAIVDELPYIEILMSSTNCKFRTVGQEFTKSGWGFAFQRDSPLAVDLSTAILQLSENGDLQKIHDKWLSKFTCSAQVNDVDSNQLSLNSFWGLFLICGIACFLALVIFSIRVFCQYMKFIPDSDEDAEEHIEQPASARRTIRSSTSFKNLIDFVDKKEAEIKEILRDKTKKRRRSESLEGRSNYSNS 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0454 933 SMART GluR_14 474 816 IPR001320 GO:0015276|GO:0016020
Lele29g0454 933 CDD GluR_Plant 471 814 - -
Lele29g0454 933 FunFam Glutamate receptor 154 314 - -
Lele29g0454 933 SUPERFAMILY Periplasmic binding protein-like I 35 465 IPR028082 -
Lele29g0454 933 SUPERFAMILY Periplasmic binding protein-like II 448 814 - -
Lele29g0454 933 CDD PBP1_GABAb_receptor_plant 40 430 IPR044440 -
Lele29g0454 933 PIRSF IGluLR_plant 1 933 IPR017103 -
Lele29g0454 933 Gene3D - 584 707 - -
Lele29g0454 933 Gene3D - 154 426 - -
Lele29g0454 933 FunFam Glutamate receptor 468 584 - -
Lele29g0454 933 FunFam Glutamate receptor 710 818 - -
Lele29g0454 933 FunFam Glutamate receptor 584 714 - -
Lele29g0454 933 Pfam Bacterial extracellular solute-binding proteins, family 3 530 815 IPR001638 -
Lele29g0454 933 Coils Coil 933 933 - -
Lele29g0454 933 Pfam Ligand-gated ion channel 816 847 IPR001320 GO:0015276|GO:0016020
Lele29g0454 933 Coils Coil 900 920 - -
Lele29g0454 933 Gene3D - 58 402 - -
Lele29g0454 933 Pfam Receptor family ligand binding region 56 411 IPR001828 -
Lele29g0454 933 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 112 140 - -
Lele29g0454 933 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 325 337 - -
Lele29g0454 933 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 52 68 - -
Lele29g0454 933 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 39 879 - -
Lele29g0454 933 Gene3D - 708 817 - -
Lele29g0454 933 Gene3D - 468 583 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0454 Lele-ChrLele29 2778132 2782374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0454 35 781 Ion Channels AT1G05200 69.786 0.0 1133