Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0446 ATGCCGAGGAATATGATCTACAGTGATGGCGACTTTAGAGACGACTTTGAGGACGAGGCGGTGGATGCGGCGAATGCAGAGGCGAAGAAGAACATGAAGAAGGGGCCATGGACGGCGGCGGAGGACGCCATTTTAATAGAGTATGTTAACAAGTACGGCGAGGGAAATTGGAATTCCGTGCAGAAGAACTGTGGGTTGACGAGGTGTGGCAAAAGTTGCAGGCTCCGATGGGCCAACCATCTCAGGCCTAATCTCAAGAAAGGTGCTTTCTCTCAGGAAGAAGAACAGCTCATCGTCGAACTTCACGCCAAGCTCGGAAACAAATGGGCTCGCATGGCCTCCCTGTTACCAGGGAGAACTGATAATGAAATAAAGAATTTCTGGAACACGAGAATGAAAAGACGCCAGAGAGTTGGTTTGCCTCTGTATCCTCCAGAACTTGACGAAGAAGCTTCTCTGCATCATCGTCTTCACCAAAACCAGCAATACCAAGCACCACCACCACCACCTCACCATTCTCCTTCTTTCTCATTCTCTTCTCTCCTATCTTCTTCCTCCAACAAACACCATAAGCTCAATGGCCAGCTAAACAATTCTGATTCTGATACAACTTATGACATAAGCTATAATCAACACCCTCAAAACATGGGCCTCCCATTACTATCCTCTCTTTCTCCCAATGGGTTTAATTATTCCTGTGGTGCCATGACAGAGATCTCTTCAGCCCAATCGGAAACACCTCCTTCTTCCTACAGCACTGGTGGGTTTCATGGCTTGATGGGAGGTTCCACCATTAATGGTCCTGGTCTTGACTACCATGAAATGGCACCATTGTCATCACCAACTGAAGGAAACAGTGGGCTCTTGGATGCTGTATTAATGGAGTCTCAAGCCATTTCGAGCAGTGACAAACGCAAGTCGAAAAGCAATGATTCTGCTGCTGGAAGAAAGTTATCTTTGAAGAGGAAACGCATTGCAGATGAAGAAGACAAGGGCACTGAGCAATTGGAGTCATTCCAGAGGGACGATTTAAGCTCTTCTCAATTATCAACAGAGAAGAAGGCATCATCAGCATCTGTTAGGGATAATGATCCATTGGAGGAGATGAGTTCGATGGACGATGGCTTGTTTAGCTTGCTGAAAAATTTTCCGTCAGAAATGCCAGTGCCCGAGTGGTACCGAAGAGGAGAAAGACAAGCATTGGAAGCTGAAAATCAACAAGAAGCTTCACTGGGCCAACCTGATGATCAGCAACTTGCTTGGACCCTCGGAACCTGCTGGTCCAACGACTTGCCCAGTATATGCTAA 1308 0.4694 MPRNMIYSDGDFRDDFEDEAVDAANAEAKKNMKKGPWTAAEDAILIEYVNKYGEGNWNSVQKNCGLTRCGKSCRLRWANHLRPNLKKGAFSQEEEQLIVELHAKLGNKWARMASLLPGRTDNEIKNFWNTRMKRRQRVGLPLYPPELDEEASLHHRLHQNQQYQAPPPPPHHSPSFSFSSLLSSSSNKHHKLNGQLNNSDSDTTYDISYNQHPQNMGLPLLSSLSPNGFNYSCGAMTEISSAQSETPPSSYSTGGFHGLMGGSTINGPGLDYHEMAPLSSPTEGNSGLLDAVLMESQAISSSDKRKSKSNDSAAGRKLSLKRKRIADEEDKGTEQLESFQRDDLSSSQLSTEKKASSASVRDNDPLEEMSSMDDGLFSLLKNFPSEMPVPEWYRRGERQALEAENQQEASLGQPDDQQLAWTLGTCWSNDLPSIC 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0446 435 MobiDBLite consensus disorder prediction 339 356 - -
Lele29g0446 435 ProSiteProfiles Myb-like domain profile. 29 81 IPR001005 -
Lele29g0446 435 MobiDBLite consensus disorder prediction 175 210 - -
Lele29g0446 435 CDD SANT 89 130 IPR001005 -
Lele29g0446 435 Pfam Myb-like DNA-binding domain 37 97 - -
Lele29g0446 435 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 25 410 - -
Lele29g0446 435 MobiDBLite consensus disorder prediction 299 370 - -
Lele29g0446 435 Gene3D - 89 135 - -
Lele29g0446 435 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 81 IPR017930 -
Lele29g0446 435 SUPERFAMILY Homeodomain-like 31 128 IPR009057 -
Lele29g0446 435 MobiDBLite consensus disorder prediction 301 338 - -
Lele29g0446 435 MobiDBLite consensus disorder prediction 155 210 - -
Lele29g0446 435 Gene3D - 26 87 - -
Lele29g0446 435 FunFam Transcription factor GAMYB 89 135 - -
Lele29g0446 435 ProSiteProfiles Myb-like domain profile. 82 132 IPR001005 -
Lele29g0446 435 MobiDBLite consensus disorder prediction 395 415 - -
Lele29g0446 435 CDD SANT 36 81 IPR001005 -
Lele29g0446 435 FunFam MYB-related transcription factor 33 86 - -
Lele29g0446 435 SMART sant 86 134 IPR001005 -
Lele29g0446 435 SMART sant 33 83 IPR001005 -
Lele29g0446 435 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 82 136 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0446 Lele-ChrLele29 2727820 2729745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0446 32 163 MYB Transcription Factor Family AT5G06100 77.273 1.21e-68 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele29g0446 Myb_DNA-bind_6 2.5e-15 CL0123