Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0443 ATGGGGTTGATAAAGCCAGCCATAGGAGACGCCATTCTAACCTCAATCTGGGTTTTCAGCATTTCAACTCTCAGAATCCTCGCTTCAGAAGTTGCCTCCTTCCTTAGCCTCCACCCTTCTTCACTCGCAGGACTCTTCATCACCACCGTCATCAACACCATTCTCGTCTTCACTATCAGTCTCATCGGCAGATTCCTCGGCGGCGCTAGCTTCAACCCCTCCACCACCGTCTCCTTTTACGCCGCCGGCCTCCGACCCAACTCCTCTCTGACCTCCATGGCCGTCCGGTTTCCTGCTCAGGCAGCAGGTGGGGTCGCCGGAGCTCGTGCTATTCTTCTCCTGATCCCCACCCAGTACAAATCCATGATGAAAGGTCCTTACTTGAAGGTGGATTTGCATACTGGGGCTATTGCGGAGGGCGTGTTGACTTTTGGTCTGAACTTGGCTATTCTTCTTGTTATGCTCAAAGGTCCTAAGAACCCTTTTCTGAAGTTGTATTTGCTTTCTGTGGCCACGGTGTCTCTGGTTATTCCTGGTTCTGCGTACACAGGGCCTTCTATGAACCCAGCGAATGCATATGGATGGGCTTACATCAATAATAGGCACAACACTTGGGAGCAGTTTTATGTTTATTGGATATGTCCTTTCATTGGGGCCACTCTTGCTGCTTCCGTCTATCGATTTCTCTTTATGTCACCAGTCAAGCAGAAGAAAGCTTGA 720 0.5014 MGLIKPAIGDAILTSIWVFSISTLRILASEVASFLSLHPSSLAGLFITTVINTILVFTISLIGRFLGGASFNPSTTVSFYAAGLRPNSSLTSMAVRFPAQAAGGVAGARAILLLIPTQYKSMMKGPYLKVDLHTGAIAEGVLTFGLNLAILLVMLKGPKNPFLKLYLLSVATVSLVIPGSAYTGPSMNPANAYGWAYINNRHNTWEQFYVYWICPFIGATLAASVYRFLFMSPVKQKKA 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0443 239 PRINTS Major intrinsic protein family signature 209 229 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele29g0443 239 PRINTS Major intrinsic protein family signature 92 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele29g0443 239 PRINTS Major intrinsic protein family signature 138 156 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele29g0443 239 PRINTS Major intrinsic protein family signature 52 76 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele29g0443 239 PRINTS Major intrinsic protein family signature 169 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele29g0443 239 PANTHER AQUAPORIN SIP1-1 1 238 IPR044222 GO:0015250
Lele29g0443 239 SUPERFAMILY Aquaporin-like 3 233 IPR023271 -
Lele29g0443 239 Gene3D Glycerol uptake facilitator protein. 2 238 IPR023271 -
Lele29g0443 239 Pfam Major intrinsic protein 8 226 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0443 Lele-ChrLele29 2705173 2705892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0443 1 230 Major Intrinsic Protein MIP AT3G04090 47.186 1.86e-61 191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0443 29 2705173 2705892 Lele32g0424 32 2672400 2673119 hybridization