Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0441 ATGTATAATGTAGTAACAAGAAATGAACAACCGCCCAAAGATGCCTCTGAAGAAGCTAAAACTACTAGCCATTGTGGCAAAAATGCAAATGAAGTCTCTTCCGGTTCACATTCCAGTTTTGAAGATGAAGAAGCTTTGAACTCCTTTCCTGACTTAAATGAAGAATCTACTTCAAGCTTTTGCCCTTCTGATGAGGTAGAAGACAACTCTGATTCATCCAATAGCTGGACTACACCGCGTAGAAAGAGAAAAGGAAGGAAAAGGAGAAAAGTCAGCTCTAAAAATGGACAGTCCAGTCAGGACATGGGAGAGTTGGACGATGGAGACAATGTTGGCTCCCCAAGAGTTCAGCAGCAACCAATTGACGATGATTTGGTTAGCCTGAGGAAGAAGAAAAAAACAAAAAGAGGAAAAAAAGATCCAAAGCCAGTGTTGTTGTGGAAGGTGTGGGAAGAGCAGAATGAGAGATGGATCGATGAGAATTTATCAGAAGATGTTGACTTGGATAATCAGAATCAACTAATGAATGAAACTGCTGAGTCTTCCTCTGATCTTACTATGCCATTACTAAGATACCAAAAGGAATGGCTAGCATGGGCTTTGAAACAGGAGAATTCTGAAATTAGGGGGGGCATTCTTGCAGACGAAATGGGGATGGGAAAGACTATTCAAGCAATTGCTCTTGTCCTTGCCCAACGTGAAATCCAGCAAATGGTTTGTGAACCAGGTGAAACATCTTTGCCAGGTTCATCTACAGTTTTGCCTAGGACCAAAGGAACGCTTGTTATTTGTCCTGTGGTTGCTGTCACTCAGTGGTTTAGTGAGATTGATAGTTTTACCCTAAAAGGAAGCACCAAGGTGCTAATTTATCATGGAGCCAATAAAGGGAAGTGTAGGGAAGAGTTATCAGATTATGATTTTGTAATAACTACATACTCTACTGTTGAAGTAGAGTACAGAAAGTATATGATGCCTCCTAAGGAAAAGTGCCCATATTGTGGCAAATCTTTTAGCCATACGAAGTTATCTGTTCACCAGAGATATTATTGTGGGCCTGGTGCTGAGAGAACAGAAAAACAATCGAAGCAATTCAAGAAAAAGAAAAGAGAAGTTAATATAAAGAAGAAAATTCAGATGGACAAGGGACCAGATAATTCAGATGCCACACACAAGGGCAAGTCCCTTTTACATATTGTAAAGTGGCAGCGGATCATTTTGGACGAGGCACACTATATTAAATCTAGACAATGTAACACTACAAAAGCAATTCTTGCTCTAGAGTCTTCCTATAAATGGGCGCTAAGTGGAACTCCCCTTCAGAATCGTGTGGGAGAGCTGTATTCTCTGGTCAGGTTCTTGATCATAGATGAGGGACTTCATATTTCGCTATTCTGTAATTCCATACATTCTGAATTAAAGCAAGCTGCTCTTTTCTTTAGAGTTCTGGGGAATGTTCATACTGCCTGCACAGTTCTGTCAGGCATTTCTGCTGGTGGAATAAAGTATACATTGATCACTTACATCAAGTCTTTGCAGGTTTCATTGAGAAAGGATAGCTTGGATATAAAAGAGCAAGACTATTATGAATCATTGTACAATGAGAGTCAGGCACAGTTTAATACATATGTGGAATCAAATACTTTGACAAATAACTATGCTCATATATTTGACCTCCTCACCAGACTTCGGCAGGCTGTTGATCATCCTTACCTTGTTGTATATTCTCAAGCTGCATCATTAAAAGCTGGAGTTGAGGTTAGCAATGACAATGTTAAACAAGTATGTGGCCTTTGTCATGACCCAGTAGAAGATCCTGTGGTTACCTCATGTGAACACATCTTTTGTAAGGCATGCTTGATAGACTTCTCTGCTTCCTTGGGGCGAGTGTCATGCCCTTCATGCTCCAAATTACTTACTGTTGATTTAACTTCAAATAAGGATGTTGGGGATAACTCTAGAAAAACAACAATAAAGGGTTTCAGATCCTCAAGCATTTTAAATAGAATTCGGCTGGAGAACTTTCAAACAAGCACTAAAATAGAGGCATTGTCTGGTGTGTCTTGCGTTCAACTGAATGGAAGCATGTCATTAGCTGCCCGGGATGCAGCCATTAGGAGATTTACTGATGATCCAGAATGCAAAATTTTTCTCATGAGCTTGAAAGCCGGTGGTGTTGCCCTCAATTTGACCGTTGCATCACATGTTTTCATTATGGACCCTTGGTGGAATCCAGCCGTGGAGCGTCAGGCTCAAGATAGAATTCACCGAATAGGGCAATATAAACCAATCAGGATTGTGAGGTTTGTGATCGAGAACACTATTGAGGAGAGGATTTTGAAGCTGCAAGAGAAGAAGGAGCTTATGTTTGAAGGGACTGTTGGTGGCTCTGCCGAGGCTCTGGGCAAACTCACTGAGGCAAACATGAGATTTCTGTTCGTTACCTGA 2445 0.4086 MYNVVTRNEQPPKDASEEAKTTSHCGKNANEVSSGSHSSFEDEEALNSFPDLNEESTSSFCPSDEVEDNSDSSNSWTTPRRKRKGRKRRKVSSKNGQSSQDMGELDDGDNVGSPRVQQQPIDDDLVSLRKKKKTKRGKKDPKPVLLWKVWEEQNERWIDENLSEDVDLDNQNQLMNETAESSSDLTMPLLRYQKEWLAWALKQENSEIRGGILADEMGMGKTIQAIALVLAQREIQQMVCEPGETSLPGSSTVLPRTKGTLVICPVVAVTQWFSEIDSFTLKGSTKVLIYHGANKGKCREELSDYDFVITTYSTVEVEYRKYMMPPKEKCPYCGKSFSHTKLSVHQRYYCGPGAERTEKQSKQFKKKKREVNIKKKIQMDKGPDNSDATHKGKSLLHIVKWQRIILDEAHYIKSRQCNTTKAILALESSYKWALSGTPLQNRVGELYSLVRFLIIDEGLHISLFCNSIHSELKQAALFFRVLGNVHTACTVLSGISAGGIKYTLITYIKSLQVSLRKDSLDIKEQDYYESLYNESQAQFNTYVESNTLTNNYAHIFDLLTRLRQAVDHPYLVVYSQAASLKAGVEVSNDNVKQVCGLCHDPVEDPVVTSCEHIFCKACLIDFSASLGRVSCPSCSKLLTVDLTSNKDVGDNSRKTTIKGFRSSSILNRIRLENFQTSTKIEALSGVSCVQLNGSMSLAARDAAIRRFTDDPECKIFLMSLKAGGVALNLTVASHVFIMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELMFEGTVGGSAEALGKLTEANMRFLFVT 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0441 814 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 143 475 IPR027417 -
Lele29g0441 814 CDD SF2_C_SNF 685 769 - -
Lele29g0441 814 ProSitePatterns Zinc finger RING-type signature. 610 619 IPR017907 -
Lele29g0441 814 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 33 812 - -
Lele29g0441 814 SMART helicmild6 674 758 IPR001650 -
Lele29g0441 814 MobiDBLite consensus disorder prediction 50 76 - -
Lele29g0441 814 Gene3D - 519 811 IPR027417 -
Lele29g0441 814 SMART ultradead3 185 464 IPR014001 -
Lele29g0441 814 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 399 812 IPR027417 -
Lele29g0441 814 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 202 456 IPR014001 -
Lele29g0441 814 CDD DEXDc_SHPRH-like 189 456 - -
Lele29g0441 814 SMART ring_2 595 634 IPR001841 -
Lele29g0441 814 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 587 630 IPR013083 -
Lele29g0441 814 SUPERFAMILY RING/U-box 592 639 - -
Lele29g0441 814 Gene3D - 191 330 IPR038718 -
Lele29g0441 814 ProSiteProfiles Zinc finger RING-type profile. 595 635 IPR001841 -
Lele29g0441 814 Pfam SNF2-related domain 203 572 IPR000330 GO:0005524|GO:0140658
Lele29g0441 814 Gene3D - 334 476 IPR038718 -
Lele29g0441 814 Pfam Helicase conserved C-terminal domain 677 758 IPR001650 -
Lele29g0441 814 Pfam Zinc finger, C3HC4 type (RING finger) 595 634 IPR018957 GO:0046872
Lele29g0441 814 Coils Coil 354 374 - -
Lele29g0441 814 MobiDBLite consensus disorder prediction 22 43 - -
Lele29g0441 814 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 644 804 IPR001650 -
Lele29g0441 814 MobiDBLite consensus disorder prediction 1 139 - -
Lele29g0441 814 MobiDBLite consensus disorder prediction 79 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0441 Lele-ChrLele29 2686342 2691877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0441 131 814 RAD5 or RAD16-like Gene Family AT1G05120 55.297 0.0 817
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele29g0441 SNF2_N 8.3e-50 CL0023