Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0438 ATGGATTGGAGCAGAGGCCATACGCTGGGCCGCGGCTCCTCCGCCACCGTCTCTCTCGCATCCTCCTCCTCCTCCTCCTCCTCTGACATCCTCTTCGCCGTCAAGTCATCGGAGCTCTCTCGCTCTCTGTTCTTACAGAGAGAACAGAGTATCCTCTCCACTGTTTCTTCTCCTTATATTGTTGGCTATAAGGGTTGTGATGTTACTAGAGAGAATAACAAGCTCTTTTACAATCTCTTCATGGAGTACATGCCCTTCGGTACTGTTCTTCAGGCGGTTAAACGGCACGGTGGTTGCATCGACTTGGGGGTGGTAGGGTTCTACACTTGGCAGATTTTGCAGGGTTTGGAATATTTACATTCCAACGGGTTGGTACATTGTGACATTAAGAGCACCAACATATTGATTGGTGAAGATGGAGCGAAGATTTCGGATTTTGGGTGTGCCAAGCGGGTTGATGACACGGCAGTGCCGATCAGCGGGACACCGATGTTTATGGCGCCGGAGGTGGCGCGTGGGGAAGAACAGGGGTGCGCTGGTGATATTTGGGCACTTGGGTGCACAGTGATCGAAATGGCTTCTGGGGTTTCGCCGTGGCCGAACATGGCTGACCCTTTCTCGGTTCTTCACAGGATCGCATATTCCGGCGAGACTCCCGAGATTCCAGGGTTTCTACCAGGGGAAGCAAAGGATTTCTTAGACAAGTGCTTGAGGAGGAATCCGACGGAGAGATGGACGGCTACTCAACTGTTTAAACACCCATTCGTTACGGAATTCAATTCGAAATCCATCGACAAGGAAATTCAAAAACTCAATTCGAGTTCACCGACATGCGTACTTGAGCATGGGTTTTGGAATTCCACGGAAGAATCGGAAACTCACGGAAATATGATCCGTACGAGGTTCGAAGATTCGGCCGCCGATAGAATCAGAAGGTTAGCTGAATTCTCATCAGAACCCAGATGGACAAATGATGATAATTGGATCATAATCAGAGGAATCGACGAAGCATCAGCTTCAACCGGTGACGATGGTTCGGAAGAGTCGGTGAAAAGCAACGTTAGAAGTAGAATTATTGGGTGTTTCACCGGAAATTACGAATTTAGTGAAATTAGTGATATAATTAGTACTCATAACAATTTTGAGGGAGGCACTGTAAATAGGATGTTACAGCCTTCTACGTCAGTTTATTCATGA 1197 0.4787 MDWSRGHTLGRGSSATVSLASSSSSSSSDILFAVKSSELSRSLFLQREQSILSTVSSPYIVGYKGCDVTRENNKLFYNLFMEYMPFGTVLQAVKRHGGCIDLGVVGFYTWQILQGLEYLHSNGLVHCDIKSTNILIGEDGAKISDFGCAKRVDDTAVPISGTPMFMAPEVARGEEQGCAGDIWALGCTVIEMASGVSPWPNMADPFSVLHRIAYSGETPEIPGFLPGEAKDFLDKCLRRNPTERWTATQLFKHPFVTEFNSKSIDKEIQKLNSSSPTCVLEHGFWNSTEESETHGNMIRTRFEDSAADRIRRLAEFSSEPRWTNDDNWIIIRGIDEASASTGDDGSEESVKSNVRSRIIGCFTGNYEFSEISDIISTHNNFEGGTVNRMLQPSTSVYS 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0438 398 SUPERFAMILY Protein kinase-like (PK-like) 3 264 IPR011009 -
Lele29g0438 398 FunFam Mitogen-activated protein kinase kinase kinase 17 2 309 - -
Lele29g0438 398 SMART serkin_6 3 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele29g0438 398 CDD STKc_MAPKKK 2 256 - -
Lele29g0438 398 Gene3D Transferase(Phosphotransferase) domain 1 2 323 - -
Lele29g0438 398 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 301 - -
Lele29g0438 398 ProSiteProfiles Protein kinase domain profile. 3 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele29g0438 398 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Lele29g0438 398 ProSitePatterns Protein kinases ATP-binding region signature. 9 35 IPR017441 GO:0005524
Lele29g0438 398 MobiDBLite consensus disorder prediction 1 22 - -
Lele29g0438 398 Pfam Protein kinase domain 5 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0438 Lele-ChrLele29 2675315 2676511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0438 2 362 MAP Kinase Kinase Kinase AT5G55090 46.825 1.16e-107 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lele29g0438 Pkinase 2.7e-50 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g1012 11 17230956 17231345 Lele29g0438 29 2675315 2676511 CCT
Lele12g0308 12 2876701 2877090 Lele29g0438 29 2675315 2676511 CCT
Lele09g1011 09 19179837 19183327 Lele29g0438 29 2675315 2676511 CCT
Lele10g0970 10 20934551 20938100 Lele29g0438 29 2675315 2676511 CCT
Lele29g0438 29 2675315 2676511 Lele31g1106 31 17791627 17792820 hybridization
Lele29g0438 29 2675315 2676511 Lele32g0419 32 2642419 2643603 hybridization