Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0436 ATGGCCAGAGGGAGTGGACTCTCCATTGATTCAGATCCAGCTTTGATGAGCAGCTTCTTCCTCTCCAATCCCATTGTTCTCAACTCTTTCCCTCTCGAAGACCACGCCCTTCAACTGCCTATGGAATCTTCAATCCCTTTCCCTGAGATGGACTTCTTCTCTAACAGCAACAATCTCAAGCCTGCATCTTCCAACGCCGATTCCTCTATCCCTCCCCATCCTCTTCAATTCAAAGTAAACACTGTTCTGAATCTCTTGACTACTAACACCGATCAAACCGTTGGGGATGATGAGCTTGCCATATATTCTAGTTCTAGAGATAAACGAGCCAAGATTGAGACTGAGATTGCTGCTCTTCAAGCTGAGTTAGAGCAGATGATAAGCGAGAATCATAAGCTGAATGACATGCTAAATAAGGCTAACACCGATTACAATGAGCTAAAGATGCATATAGACTTTATTGAGTCTCGCAAGGGTAGTGATGAGGATGCTGAGAAACCTGAAAACAAAGTGCCTTGTGTAAGTCCGGAAGGAAACAAACAAACTGAGAGTAACAGAAGAACCTTAGTGCCAAGGCAATTTATAGATCTTGGATTAGCTTCAATCATTGAAGGTGATCATCAGGCTAATAGTGATGAGCCTCCACTTTCTTCTGCCACAAGGAGAAACAGTGCCGGATCAAGATCACCATTGGAGGTGGAATGCAGCGCCAGAATTGGTTCCAATAAGAATGAATTCAACAAAGAAACTGAAATCAAACAAGAAGCAGGCAAAATTCAGAAGTATAGTCCTCCTTCGGAAAATGTTGATGATCAAGTGGAAGCCACCATGAAGGCAAGAGTTTCAGTTAGAGCTCGATCAGAAGCACCTATGATTACGGATGGATGTCAATGGAGAAAATATGGGCAGAAGATGGCCAAAGGGAATCCATGCCCTCGAGCGTATTATCGATGCACCATGGCTCCAGGCTGTCCTGTTAGGAAACAGGTGCAAAGATGTGCAGAGGATCGATCAATCTTAGTAACAACATATGAAGGAAACCATAGCCATACATTGCCTCCAACAGCAATGACGATGGCACAAACAACAGCAGCAGCAGCAAAGATGTTGCTTTCAGGATCAATGTCAAGCAGTGATGGTCTAATGAATGGAAGCTTCTTGACAAGGACGGCATTGCTTCCCTGTTCTTCAAGTAACATGATAGCAACTCTCTCAGCCTCAGCTCCATTTCCAACTGTTACGTTGGACTTAACTATTCCTCCGACAACACAACCTTCTACCCAATTTCATATGCCTTTCTCAAATGATAATGCCTCTCATGGTTTCAGTCAAGTTTTGGCTCAAGCACTATGTAGCAGCAATCAGTCAACTTTTTCAGGGCTTCAAATGAACAACAAAGACCCTTTGCCATTCAATGCTGCTATAGCAGCTAACCCTAACTTCACAGAAGCTTTAACAGCTGCTATTACTTCCATTATGGGTTCTACTCTGCCAAAGAACATTAACAGTGACAATAACAATGATTCAAAATTCTTAGGGAACTAG 1545 0.4304 MARGSGLSIDSDPALMSSFFLSNPIVLNSFPLEDHALQLPMESSIPFPEMDFFSNSNNLKPASSNADSSIPPHPLQFKVNTVLNLLTTNTDQTVGDDELAIYSSSRDKRAKIETEIAALQAELEQMISENHKLNDMLNKANTDYNELKMHIDFIESRKGSDEDAEKPENKVPCVSPEGNKQTESNRRTLVPRQFIDLGLASIIEGDHQANSDEPPLSSATRRNSAGSRSPLEVECSARIGSNKNEFNKETEIKQEAGKIQKYSPPSENVDDQVEATMKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAPGCPVRKQVQRCAEDRSILVTTYEGNHSHTLPPTAMTMAQTTAAAAKMLLSGSMSSSDGLMNGSFLTRTALLPCSSSNMIATLSASAPFPTVTLDLTIPPTTQPSTQFHMPFSNDNASHGFSQVLAQALCSSNQSTFSGLQMNNKDPLPFNAAIAANPNFTEALTAAITSIMGSTLPKNINSDNNNDSKFLGN 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0436 514 MobiDBLite consensus disorder prediction 175 189 - -
Lele29g0436 514 SUPERFAMILY WRKY DNA-binding domain 285 353 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele29g0436 514 FunFam probable WRKY transcription factor 31 277 354 - -
Lele29g0436 514 Gene3D WRKY domain 277 354 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele29g0436 514 MobiDBLite consensus disorder prediction 211 230 - -
Lele29g0436 514 ProSiteProfiles WRKY domain profile. 287 353 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele29g0436 514 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 91 504 IPR044810 GO:0003700
Lele29g0436 514 MobiDBLite consensus disorder prediction 157 189 - -
Lele29g0436 514 Coils Coil 102 157 - -
Lele29g0436 514 MobiDBLite consensus disorder prediction 206 248 - -
Lele29g0436 514 SMART WRKY_cls 292 352 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele29g0436 514 Pfam WRKY DNA -binding domain 294 350 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0436 Lele-ChrLele29 2659263 2661703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0436 79 507 WRKY Transcription Factor Family AT1G62300 46.383 1.98e-101 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lele29g0436 WRKY 5.7e-24 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g1015 11 17259513 17263001 Lele29g0436 29 2659263 2661703 CCT
Lele12g0306 12 2854208 2858054 Lele29g0436 29 2659263 2661703 CCT
Lele29g0436 29 2659263 2661703 Lele31g1111 31 17810672 17813129 hybridization
Lele29g0436 29 2659263 2661703 Lele32g0417 32 2629869 2632289 hybridization