Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0423 ATGGATCGTCGCATCCATGGCGTCACCACGCTCCGCATCTCTCTTCTCCTTCTTCTCTCCGGCTTCCCCTTTCTCGCATTCTCGGATTATCCAAATCCCAGATGGTCGGTCGCTTCTTCATCGGGCCAAATAAACTCCAACTCAGTTCTGGTGGCCCTTCTGGATTCGCATTACACCGAACTTGCCGAGCTGGTCGAGAAGGCTATGCTTTTGCAGACTCTCGAAGACACTGTCGGTGCCCACAACATCACCATCTTCGCACCCAGAAACGAAGCTCTCGAGCGCGATCTCGACCCAGAGTTCAAGCGCTTCCTTCTCGAACCCGGTAATCTCAAGTCTCTTCAGTCCTTGCTCATGTTTCATATCATTCCCACCCGTATTGGATCGCAGGCATTGCCCGCTCAAACCGGGTCAGCCCGTCATGAGACGCTCTTTAAGTCCGAGTTCATTCACCTTGCCAATAATGGCACCGGGAAATGGACAGTGGATCGCGCCAGGATCATCCACCCCGACGTAGTCTCCCGACCCGACGGAGTGATCCACGGGATCGAGCGCCTCCTGGTCCCTTTTTCCGTCCAAGATGACTTCAACCATCGGCGGAGTCTTCAGTCCATTACGGCGGTGAAGCCTGAGGGAGCACCGGAGGTTGACCCGAGGACGCATCGCCTCAAGAAGCCTGCTCCTCCGGTTAAACCAGGTTCGCCGCCGGTTTTGCCCATTTACGACGCCATGGCTCCGGGACCGTCTCTGGCTCCCGCCCCAGCTCCCGGTCCCGGTGGACCACACCATCATTTCAACGGCGAAGCCCAGGTCAAGGATTTCATCCAGACACTGCTTCATTACGGTGGGTACAATGAAATGGCCGACATTTTGGTGAACCTGACATCCTTAGCCACCGAAATGGGTCGGTTAGTGTCTGAGGGTTATGTCCTAACTGTTCTTGCTCCGAACGATGAAGCCATGGCTAAACTAACCACGGACCAGCTGAGCGAACCTGGTGCTCCGGAGCAGATAATGTACTACCATCTAATACCCGAATATCAAACCGAGGAGAGTATGTATAATTCAGTTCGAAGGTTCGGACGGTTCAACCCGCCAAAGTCGTGGTCAAGCATAGAAGAGGAAAATTTCTGGAAGCTGCATGCCGGATGCTTGGAACCTTCGGACAGGATTCTAGATTCGCCACTTGCCATTGAAGAACCAGTCCTTTGGCTGGCAACATACGTATTCACAATTATATTGCTGGAAGTCCCAAAGATGTAA 1263 0.5344 MDRRIHGVTTLRISLLLLLSGFPFLAFSDYPNPRWSVASSSGQINSNSVLVALLDSHYTELAELVEKAMLLQTLEDTVGAHNITIFAPRNEALERDLDPEFKRFLLEPGNLKSLQSLLMFHIIPTRIGSQALPAQTGSARHETLFKSEFIHLANNGTGKWTVDRARIIHPDVVSRPDGVIHGIERLLVPFSVQDDFNHRRSLQSITAVKPEGAPEVDPRTHRLKKPAPPVKPGSPPVLPIYDAMAPGPSLAPAPAPGPGGPHHHFNGEAQVKDFIQTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIMYYHLIPEYQTEESMYNSVRRFGRFNPPKSWSSIEEENFWKLHAGCLEPSDRILDSPLAIEEPVLWLATYVFTIILLEVPKM 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0423 420 SMART fasc_3 312 399 IPR000782 -
Lele29g0423 420 SMART fasc_3 84 190 IPR000782 -
Lele29g0423 420 Gene3D FAS1 domain 49 189 IPR036378 -
Lele29g0423 420 ProSiteProfiles FAS1/BIgH3 domain profile. 45 187 IPR000782 -
Lele29g0423 420 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 9 363 IPR044654 -
Lele29g0423 420 Pfam Fasciclin domain 296 356 IPR000782 -
Lele29g0423 420 Pfam Fasciclin domain 57 189 IPR000782 -
Lele29g0423 420 ProSiteProfiles FAS1/BIgH3 domain profile. 271 347 IPR000782 -
Lele29g0423 420 SUPERFAMILY FAS1 domain 250 357 IPR036378 -
Lele29g0423 420 SUPERFAMILY FAS1 domain 42 190 IPR036378 -
Lele29g0423 420 Gene3D FAS1 domain 263 373 IPR036378 -
Lele29g0423 420 MobiDBLite consensus disorder prediction 209 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0423 Lele-ChrLele29 2599955 2602794 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0423 29 2599955 2602794 Lele09g1017 09 19310199 19312434 CCT
Lele29g0423 29 2599955 2602794 Lele11g1023 11 17382968 17385852 CCT
Lele29g0423 29 2599955 2602794 Lele31g1123 31 17880089 17882943 hybridization
Lele29g0423 29 2599955 2602794 Lele32g0403 32 2557789 2560708 hybridization