Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0422 ATGGCTCTTTGTATTTTGTTGGCTTTCTTGAAATTCTTTAACACATTGTTTTGGTATTTTCTGTTGTTGATATTACAGTCGGATATACGGAAGTGGTTTATGAAATCTCATAACAAGGGCAATGCTTCGGAGTCGAAGCCTACGAATGAAGTGAAGCCTTCTTCAGCTAGACCACAACCGGAAAAACCAGTAGCTGGAGGCCAAGATAGTACAGGGAAGAGGAAAACTAGCAAACCTCTTGCCACTGACAAAAACAAAAAAGATGAAAAAGAGGCACAGGAGCTTCCTGCTAAAAGGAAGAATCCCAGGGACAGTGAGGACTTGCAGAAGCCTCTTCCTAAAAAAAATCATTTAGATGATGAAGATGATGACTCTACCTTGCTCACATCTAAAAGGAAATCAGTTGATACCGCCCCAATAAAAAAATTGAAGGGTGAATCTGGTAAGGGAGTTCCACTTAAGTCTCCTGATTTGGAAAAAAGCGACGAGGAAGATGTTAAAGATGATGTATCACCCATTAAATTTGGTGGAAGGGGACGTGGAGGAAGAGGAGCATCTGCACAAGCATCTAGTGGACGGGGTAGAGGGGGTGGAAGGGGTGGATTTATGAATTTTGGTGAAAGAAAAGATCCTCCTCACAAAGGAGAAAAGGAACTCCCTGAAGGTGCTCCTGATTGTTTGGCCGGTTTGACTTTTGTCATTAGTGGAACATTGGACAGTTTGGAACGAGAAGAAGCAGAAGATTTGATTAAACGCCATGGTGGTCGTGTCACTGGATCAGTCAGCAAAAAAACGAATTATCTTCTATGTGATGAAGATATTGGAGGTCGGAAGTCTTCAAAAGCGAAAGAGCTGGGTACAAAATTTCTCACTGAGGATGGGTTGTTTGACATGATTCGTGCATCAAAACCTGCAAAGGCTCCTCCACAGGAAGAGTCAAAAAAATTGGTGAATAAGGTTGTGGCAACCCAGTCTAAAAGTCCTCAGAAAGCTGGAGTCAAGGTCTCCCAACCTTCAGGTTCAGGTTCAGCTTCAGCTCCAGTGAAGCCTAAGACTGAAAATTCTGTACAGTGTTCTTTCATGTGGACAGAGAAGTATAGACCTAAGGTTCCAAATGACATCATAGGAAATCAATCACTTGTTAAACAGCTTCATGATTGGTTGGCTCATTGGAATGAACAATTTCTTGACAGTGGAAAGAAAAAGGGAAAAAAGCAAAATGACACTGGTTCAAAAAAAGCTGTCTTATTAAGTGGGACCCCTGGCATAGGAAAAACCACTTCAGCGAAGTTGGTCTGTAAGATGCTTGGTTTCCAAGCTATAGAGGTTAATGCTAGCGACAGCCGTGGGAAGGCTGATAGCAAAATTGTTAAAGGAATCAGTGGAAGCAATGCAAACTCTATAAAGGAACTTGTCACCAACGCAGCTTTGGATGCTAAGACAAATGGGGTGAAGCATTCCAAAACTGTGCTCATCATGGATGAGGTTGATGGCATGTCAGCAGGTGATCGGGGTGGCATTGCTGATCTTATTGCTAGCATCAAGATATCAAAAATTCCTATTATCTGCATTTGTAATGACCGCTACAGCCAGAAACTGAAAAGTCTTGTGAACTACTGTCTGCTGCTTAGCTTTCGAAAACCTACAAAGCAACAGATGGCAAAGAGGTTGATGCAAGTTGCAAAAGCTGAAGGGCTTCAAGTCAACGAGATTGCTCTTGAGGAGCTAGCAGAAAGAGTGAATGGAGATATGCGCATGGCAATAAATCAGTTACACTATATGAGCCTCTCCATGTCTGTTATTAACTATGACAACATCAGGCAACACCTTTTTTCCAGCTCAAAGGATGAGGACATTTCGCCATTCACTGCTGTTGATAAGCTTTTTGGTTTTAATGCTGGGAAGTTAAAAATGGATGAGAGGATTAATCTTAGCATGAGTGATCCTGACCTTGTTCCTCTTATTATTCAGGAAAATTATATTAATTATAGACCAAGTGTGGCTAGTAAAGATGACAATGATATGAAGCGCATGAAGTTAATTGCCCGTGCTGCTGAGTCTATTGCTGATGGGGATATAGTGAATGTACAGATTCGAAGATATCGACAGTGGCAGCTCTCTCAAGCTAGTACTCTTGCATCGAGTATAATTCCTGCTTCATTGTTGCGTGGGCAAAGAGAAATCCTTGAACCGGGAGAACGGAATTATAATCGGTTTGGTGGTTGGCTGGGGAAAAACTCAACAATGGGCAAAAACTTTAGGCTTTTGGAAGATCTGCATGTTCACATTCTTGCTTCTCGTGAATCCAGTCCCGGAAGGGAGACCCTCCGTTTGGATTATCTAAAACCACTTCTTCAACAGTTGACAGAACCACTGCGAGTGTTGCCTAAGGATGAAGCTGTTCAGAAAGTTGTGGAATTTATGAATATGTACTCAATCAGTCAAGAGGATTTTGATACTATTGTCGAACTATCAAAATTCAAGGGTCATCCAAATCCACTAGATGGCATACCGCCTGCTGTTAAATCTGCACTTACAAAAGCATACAAAGAAGAAAGCAAGTGTCGGAAGGTTCGAGTTGCAGATCTAGTCACCATTCCTGGAACGAAAAAGGCTGTTAAGAAGCGAGTTGCTGCTATCCTAGAACCATCTGATCAAGGACTGGAACAGGGTGAAGGTGATACCCTGGAAGAGAGTGAAGAGAATTCCTCAGACACAGAGGAGTCAGGAGGTACCACCCCTGGTGAGAAGCTGCAGTCAGAACTTAAAAGTTTAAATTCAAAGGCCATGCGAGTACAATTGGATTTGAAGGGAACAGGAAATTCAAGTGCCAAGAAGACACCGACTGGAAGAGGTAAAGGTTCTTATGCATCGGCCGAGAAGGGTGGTCAAGCTTCAAGAGGTAGAGGTGGGGCAAAAAGAAAGAGGTGA 2931 0.4251 MALCILLAFLKFFNTLFWYFLLLILQSDIRKWFMKSHNKGNASESKPTNEVKPSSARPQPEKPVAGGQDSTGKRKTSKPLATDKNKKDEKEAQELPAKRKNPRDSEDLQKPLPKKNHLDDEDDDSTLLTSKRKSVDTAPIKKLKGESGKGVPLKSPDLEKSDEEDVKDDVSPIKFGGRGRGGRGASAQASSGRGRGGGRGGFMNFGERKDPPHKGEKELPEGAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKSSKAKELGTKFLTEDGLFDMIRASKPAKAPPQEESKKLVNKVVATQSKSPQKAGVKVSQPSGSGSASAPVKPKTENSVQCSFMWTEKYRPKVPNDIIGNQSLVKQLHDWLAHWNEQFLDSGKKKGKKQNDTGSKKAVLLSGTPGIGKTTSAKLVCKMLGFQAIEVNASDSRGKADSKIVKGISGSNANSIKELVTNAALDAKTNGVKHSKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKRLMQVAKAEGLQVNEIALEELAERVNGDMRMAINQLHYMSLSMSVINYDNIRQHLFSSSKDEDISPFTAVDKLFGFNAGKLKMDERINLSMSDPDLVPLIIQENYINYRPSVASKDDNDMKRMKLIARAAESIADGDIVNVQIRRYRQWQLSQASTLASSIIPASLLRGQREILEPGERNYNRFGGWLGKNSTMGKNFRLLEDLHVHILASRESSPGRETLRLDYLKPLLQQLTEPLRVLPKDEAVQKVVEFMNMYSISQEDFDTIVELSKFKGHPNPLDGIPPAVKSALTKAYKEESKCRKVRVADLVTIPGTKKAVKKRVAAILEPSDQGLEQGEGDTLEESEENSSDTEESGGTTPGEKLQSELKSLNSKAMRVQLDLKGTGNSSAKKTPTGRGKGSYASAEKGGQASRGRGGAKRKR 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0422 976 PIRSF RFC1 26 949 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Lele29g0422 976 SUPERFAMILY post-AAA+ oligomerization domain-like 619 764 IPR008921 GO:0003677|GO:0006260
Lele29g0422 976 MobiDBLite consensus disorder prediction 206 221 - -
Lele29g0422 976 Gene3D - 360 547 IPR027417 -
Lele29g0422 976 SMART AAA_5 411 549 IPR003593 -
Lele29g0422 976 Gene3D - 620 729 - -
Lele29g0422 976 Pfam ATPase family associated with various cellular activities (AAA) 415 503 IPR003959 GO:0005524|GO:0016887
Lele29g0422 976 ProSiteProfiles BRCT domain profile. 222 303 IPR001357 -
Lele29g0422 976 MobiDBLite consensus disorder prediction 76 143 - -
Lele29g0422 976 CDD BRCT_RFC1 222 300 - -
Lele29g0422 976 CDD AAA 408 511 - -
Lele29g0422 976 Gene3D - 548 618 - -
Lele29g0422 976 CDD HLD_clamp_RFC 548 606 - -
Lele29g0422 976 Pfam BRCA1 C Terminus (BRCT) domain 224 299 IPR001357 -
Lele29g0422 976 MobiDBLite consensus disorder prediction 153 174 - -
Lele29g0422 976 MobiDBLite consensus disorder prediction 38 223 - -
Lele29g0422 976 FunFam Replication factor C subunit 1 548 619 - -
Lele29g0422 976 Gene3D BRCT domain 199 301 IPR036420 -
Lele29g0422 976 Coils Coil 969 976 - -
Lele29g0422 976 Pfam Replication factor RFC1 C terminal domain 688 850 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Lele29g0422 976 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 360 608 IPR027417 -
Lele29g0422 976 MobiDBLite consensus disorder prediction 38 55 - -
Lele29g0422 976 MobiDBLite consensus disorder prediction 322 350 - -
Lele29g0422 976 FunFam Replication factor C subunit 1 620 729 - -
Lele29g0422 976 MobiDBLite consensus disorder prediction 891 905 - -
Lele29g0422 976 FunFam Replication factor C subunit 1 198 301 - -
Lele29g0422 976 SUPERFAMILY BRCT domain 222 303 IPR036420 -
Lele29g0422 976 FunFam Replication factor C subunit 1 360 547 - -
Lele29g0422 976 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 39 959 - -
Lele29g0422 976 MobiDBLite consensus disorder prediction 906 927 - -
Lele29g0422 976 MobiDBLite consensus disorder prediction 883 976 - -
Lele29g0422 976 SMART BRCT_7 224 302 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0422 Lele-ChrLele29 2591335 2598531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0422 27 928 Core DNA Replication Machinery Family AT5G22010 68.237 0.0 1109
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0422 29 2591335 2598531 Lele31g1124 31 17884439 17891645 hybridization
Lele29g0422 29 2591335 2598531 Lele32g0402 32 2552744 2556577 hybridization