Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0408 ATGGATGAAATCGAAGTTCCTCAGTATTTCGTGTGTCCCATTTCGCTTCAGATCATGAAGGATCCGGTGACAACATTCACCGGCATAACCTACGACAGAGAAAGCATCGAACAATGGTTGCTCAGGGCCAAAGAACACAAGTGTCCTGTCACCAAGCAACCATTGCCCAGAGGCTCCGATCTCACTCCCAACCACACCCTCCGCCGTCTCATCCAAGATTGGTGCTCCGAAAACGCCGCTCATGGCGTCGATCGTATCCCTACCCCTAAATCCCCTCCCTCCAAGACCCTCCTCCAGAAACTGATAAGAAATCTCGAGCTTCCCCATCTGTACCAATCCGCATTGGAGAGATTGCATTCTCTGGCCACAGAAAACCAAAGGAACCTCAAGTGCATGGTAGAATCCGGTGTGGCCGAGTCTATGATTCATCTCATTACCAAAAAGTCCAAGGATTCAGGTAACAACACTAATTCCCTCGAACAATCTCTGCCAATTCTACGCCTTCTCTGGAGTTATTGCGACAACAACATCAAGCCTCTGGTCATCCACAACATCGACTTCATCAAAACGCTGACCTGGATTCTTCAGCTCCACGTGGACACCAACGTCAATCTGATAAACGAAGCAATGCCCGTGTTAAAATGCACCATCGAACTCGCAGATTCAACACTTTTAGGAAGTTTGAAACCCGATTTCTTCAGTGAAATCACAAGGGTGCTCAGAAACAGATCGATCTCACAAGCAGCCATGAAGTCGGCCTTGCAAATTCTCATAGAAACGTGTCCTTTAGGTAGAAACAGAACGAGGATAGTGGAAGCAGGAGCAGTTTATGAATTGATCGAGCTTGAGATAGAGAAACACGAGAAGAACATAACGGAGCTTATATTTAACCTGCTTGGGCAGCTATGTGCGTGTGCGGACGGAAGGGAACAATTCTTCTCACACGCGGCCGGGATTGCGGTGGTGTCGAAGAGGGTTCTGAGGGTGTCTCCGGCGACAGATGATAGGGCGGTTCATGTTTTGTGGTTGATGGCGAGGTACTCAGGGTCAAAAGACGTCGTATTGGAGATGTTGAGGGTGGGAGCTGTAACGAAGCTTTGCATGGTGATTCAGGCCATTTGTGATCCGAGTTTGAAAGAGAAAGCGAGATCGATACTGAGATTGCACTCCAATATTTGGAATGATTCGCCTTGTATTCAAGTTTATCTGTTAACCAGGCACCCAAGGTGA 1230 0.4789 MDEIEVPQYFVCPISLQIMKDPVTTFTGITYDRESIEQWLLRAKEHKCPVTKQPLPRGSDLTPNHTLRRLIQDWCSENAAHGVDRIPTPKSPPSKTLLQKLIRNLELPHLYQSALERLHSLATENQRNLKCMVESGVAESMIHLITKKSKDSGNNTNSLEQSLPILRLLWSYCDNNIKPLVIHNIDFIKTLTWILQLHVDTNVNLINEAMPVLKCTIELADSTLLGSLKPDFFSEITRVLRNRSISQAAMKSALQILIETCPLGRNRTRIVEAGAVYELIELEIEKHEKNITELIFNLLGQLCACADGREQFFSHAAGIAVVSKRVLRVSPATDDRAVHVLWLMARYSGSKDVVLEMLRVGAVTKLCMVIQAICDPSLKEKARSILRLHSNIWNDSPCIQVYLLTRHPR 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0408 409 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Lele29g0408 409 Coils Coil 277 297 - -
Lele29g0408 409 Gene3D - 92 397 IPR011989 -
Lele29g0408 409 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Lele29g0408 409 SUPERFAMILY RING/U-box 3 84 - -
Lele29g0408 409 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Lele29g0408 409 SUPERFAMILY ARM repeat 106 387 IPR016024 -
Lele29g0408 409 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 85 IPR013083 -
Lele29g0408 409 PANTHER WDSAM1 PROTEIN 3 400 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0408 Lele-ChrLele29 2486446 2487675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0408 2 408 U-box Gene Family AT2G35930 42.718 7.07e-108 322