Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0406 ATGGCTTCCACGTACTTTCTTGGCGGGAATTCTGAGATCCAGACCTCTGGGGATGGTTTACAGACGCTTTACCTTATGAATCCAACCTATGTACCTTACTCTGACACCACCTCTCAACACCCCACAACCCCGAATATGCTTCTCTTCAATCCCAACGCTTCCCCTTCTGCCAACGCGCTCAACATCCCCCACGCGCCACCTCCTTCCCGTACCCACCACCTACTTGGCGTCATCCCAACCAACATGGTCGGATCCGAAAACTCGGACATCGCTGCCTTCCATGGCTTCGCCGCCACCGCCGCCACTGCTGCGCCGCGTGTTCATAACTTGTGGGGTTCCATAATCGATCATCAAACACCGTCATCGCCGGTGGCAGTGTCGGCAACCGTGCCCAGCAGTTCAGGTGCGGCGGCTACTGCCGGTTTCCGAAGGCCTAGTCATCAGCAAGGCTTGTCACTGAGCCTTTCGTCGCAGCAGACAGCTTATAATAGGTCGCTTTCTGGTGAGCTCGATGTGCAGGGACAATCTCGAGTGTCTGCTATATCGCCGACGAGCCACGCCGGTGGTGGTAATGATATGCAGATTCTGGGAAACTCTCCGTCATCGTCATCGGTGTCGAACGGAATTTCGAGTATGCAGGGCGTGATTCTGGGGTCTAAATATCTGAAGGCAGCGCAAGAACTCCTGGATGAAGTTGTGAATGTGGGGAAGGGGATTGAGAAAAGGGGGTCGATAGAGATCGAAGCGAGCAGTGATAAAGAGAAGACGAAAGCGAATAGATCAGAATCGGAATCTGGGAATATTGGAGATGGTTCAAGTGGCGGCAAGCAAGCATCTGAACTCAGCACCGCCCAACGACAAGAGCTTCAGATGAAGAAGTCCAAGCTTGTTTCCATGCTTGATGAGGTGGAACAAAGGTACAGGCAGTACAGGCACCAAATGCAGATAGTGATATCATGGTTTGAACAAGCAGCAGGATATGGTGCAGCGAAATCGTACACAGCAGTGGCATTAGAGACAATATCGAAGCAATTTCGATGCCTTAAGGATGCAGTGTCTTCTCAGATCAAAGCAACGAGCAAGAGCCTGGGAGAGGACGATTGCTTAGGAGCTAAGGTACAAGGTTCGAGGCTCCGGTACGTCGATCACCATCTTCGGCAACAGCGAGCGCTGCAGCAGCTGGGAATGATACAGCACAACGCTTGGAGGCCTCAGAGGGGCTTGCCTGAACGAGCTGTCTCCATTCTTCGTGCTTGGCTTTTTGAGCACTTCCTTCACCCTTATCCTAAGGACTCCGATAAAGTTATGCTTGCAAAACAAACTGGACTTACTCGCAGCCAGGTATCAAACTGGTTTATAAATGCTCGAGTTCGGCTGTGGAAACCAATGGTAGAAGAAATGTACTTGGAAGAAACCAAGGAGCAGAACAATGAGTCCAACCCCAATAAGGGCAACATGAATAGATCATCAAAAGAATCAAGCAAGGTCGACGCAGACAATAATGATGCAGCAGCGCACGAAGAATCAGGTTCCATTAATATTAGATCTTCATTCGATCAGATTAATAAAGCTCTCCACTCAAAAACAGATCATGACCATCAAACATTCAACAACCAAACCACCACCTCCTTGCTCGACATGTCAAATCCTTCAATGGGAGTTAGTAACCTTTCGATGGACGTGGAAATGAAGCCCCGGTTCGTTAAAGATGGGTATAACCCCTTATTAAGTGACGAGGGTTATGGAGGATTTTCAATGCAAGACATTGGAAGGTTTAACGTTAGTAATGTTTCCGAACAGCATTTAGCTCCGAGGTTTCACGGCAACGGCGTTTCCCTCAGTTTGGGACTCCCTCACAGTGATAACCTTCCTCTCTCTGCTGCCACCCAACATGGCTTTCTCTCTCACAATCTACATTTGGGAACCAATAATGCGACTGAGCTTTGTACCATCAACGCTCCTCCTCCTCCTCCACCGTCTTCTCACTCCGGCGCAGCCACGTATGAGAATATTGATATTCAGAACAGGAAGAGCTTTGCTGCTCATCAGTTGTTGCCGGATTTCGTCACCTGA 2073 0.4954 MASTYFLGGNSEIQTSGDGLQTLYLMNPTYVPYSDTTSQHPTTPNMLLFNPNASPSANALNIPHAPPPSRTHHLLGVIPTNMVGSENSDIAAFHGFAATAATAAPRVHNLWGSIIDHQTPSSPVAVSATVPSSSGAAATAGFRRPSHQQGLSLSLSSQQTAYNRSLSGELDVQGQSRVSAISPTSHAGGGNDMQILGNSPSSSSVSNGISSMQGVILGSKYLKAAQELLDEVVNVGKGIEKRGSIEIEASSDKEKTKANRSESESGNIGDGSSGGKQASELSTAQRQELQMKKSKLVSMLDEVEQRYRQYRHQMQIVISWFEQAAGYGAAKSYTAVALETISKQFRCLKDAVSSQIKATSKSLGEDDCLGAKVQGSRLRYVDHHLRQQRALQQLGMIQHNAWRPQRGLPERAVSILRAWLFEHFLHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEETKEQNNESNPNKGNMNRSSKESSKVDADNNDAAAHEESGSINIRSSFDQINKALHSKTDHDHQTFNNQTTTSLLDMSNPSMGVSNLSMDVEMKPRFVKDGYNPLLSDEGYGGFSMQDIGRFNVSNVSEQHLAPRFHGNGVSLSLGLPHSDNLPLSAATQHGFLSHNLHLGTNNATELCTINAPPPPPPSSHSGAATYENIDIQNRKSFAAHQLLPDFVT 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0406 690 Pfam Associated with HOX 215 353 IPR006563 -
Lele29g0406 690 ProSiteProfiles 'Homeobox' domain profile. 399 462 IPR001356 GO:0003677
Lele29g0406 690 Coils Coil 286 313 - -
Lele29g0406 690 CDD homeodomain 402 463 IPR001356 GO:0003677
Lele29g0406 690 Gene3D - 405 483 - -
Lele29g0406 690 MobiDBLite consensus disorder prediction 490 504 - -
Lele29g0406 690 FunFam BEL1-like homeodomain protein 9 405 467 - -
Lele29g0406 690 Pfam Homeobox KN domain 419 458 IPR008422 GO:0003677|GO:0006355
Lele29g0406 690 MobiDBLite consensus disorder prediction 250 285 - -
Lele29g0406 690 MobiDBLite consensus disorder prediction 262 285 - -
Lele29g0406 690 MobiDBLite consensus disorder prediction 173 208 - -
Lele29g0406 690 SMART HOX_1 402 466 IPR001356 GO:0003677
Lele29g0406 690 MobiDBLite consensus disorder prediction 471 513 - -
Lele29g0406 690 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 145 489 - -
Lele29g0406 690 SMART prehox3 210 354 IPR006563 -
Lele29g0406 690 SUPERFAMILY Homeodomain-like 403 468 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0406 Lele-ChrLele29 2472671 2475994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0406 3 689 Homeobox Transcription Factor Family AT2G35940 43.124 2.91e-134 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lele29g0406 POX 2.4e-48 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g1037 09 19557237 19566928 Lele29g0406 29 2472671 2475994 CCT
Lele10g0989 10 21258600 21274098 Lele29g0406 29 2472671 2475994 CCT
Lele29g0406 29 2472671 2475994 Lele31g1138 31 18009092 18012393 hybridization
Lele29g0406 29 2472671 2475994 Lele32g0387 32 2420167 2423686 hybridization