Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0398 ATGGAGTCTCGGATGGATCAGTATGAGATCATGGAGCAGATCGGTCGTGGAGCTTTTGGAGCTGCTATTTTAGTCCATCACAAGGTTGAGAAAAAGAAATACGTGTTGAAGAAAATCAGGCTTGCGCGACAGACTGAACGATGCAGGAGATCTGCTCATCAAGAGATGGCTCTTATTGCCAGAGTCCAGCACCCTTACATCGTGGAATTTAAGGAGGCATGGGTTGAGAAGGGTTGCTATGTCTGCATTGTCACCGGATACTGTGAAGGTGGAGACATGGCTGAATTGATGAAAAAATCAAATCAGGTTCACTTTCCTGAGGAGGTATTATGGTTTTATGGATCTGTTGTACTTGCCCAGAAACTCTGTAAGTGGTTTACCCAGTTACTGTTGGCAGTGGAATACTTGCACGCTAACTTTGTTTTACATCGAGACCTGAAGTGTTCCAACATCTTTCTTACCAAGGATCATGATGTTCGCCTAGGGGATTTTGGGCTTGCTAAGACCTTAAAAGCAGATGATCTGGCTTCTTCGGTCGTAGGAACTCCCAATTACATGTGTCCGGAATTGCTTGCAGATATTCCTTACGGATTTAAATCTGATATTTGGTCGCTAGGTTGCTGTATATACGAGATGGCTGCTCATCGCCCTGCTTTTAAAGCTTTCGATATGGCAGGATTGATAAGCAAGATAAATCGTTCCTCCATTGGTCCTCTGCCTCCCTGTTATTCCCCATCTTTGAAAACGCTGATAAAGGGCATGCTGAGGAAAAACCCTGAGCATCGACCCACAGCATCTGAGATCTTAAAGCACCCTTATTTGCAATCTTATGTTGAACAGTACCATCCATCTTTCAGTCCTCCCACATCCTGCTCTCCTGAAAAGCCTATTCCTGTTACACATGATCCTCGAAGAAATGTGGCTGAAAGTCAAAACAGTAGCAGTTCAAGCAGCGACAAATATAGTTTAATGTCAAATGACAAAATCATTTCAACAGTGGTGCAGAAGTACAATAACAAAACCACTGAGACAGATGTAACATCCATTGATGATGAGGATGGTTCTGAGCATATCCTGCCTAGCGAAGAAGATACTAGCTCCAGCACTAGCAATGCCAAAGCGGATTGCCAGGAGGTGACGAAACCATCATCTAATGAACGTCAATCAATTGTTGAATCTAAGCCACCAAAAACAATTAAAAACATAATGATGGCACTAAAAGAAGGAAAGGTTAGAGAAAATGGTTATCCAATGAGAGGCAACCGCATTAAGGCTGTTGGTGTATCAGCACAGAAAAACGCAGATGCATTGCCTAAATTGCCCATGTCTAATGCTGTTGCTCCTGGTATCAAGCCAAATTTAGAGTCGCCAACTTTGACATCTGCTAAGACATCCCCTGATCCTCCAAAACGAATGCCAAGGTCACATCCTTTAAAGAATCAGGCACTACTGATGATGGACTCTTCACCAAAAGCTAAACCCAGACACGATGGGACTCCACCATCTGGTCCTATTAAACAAGTTGAAGGAGATGGAATCTCTGCCAAAGTGAGGCAAGGGACCCCCCCTAGTTTACTTAGACAACCTTCATTTCGAGGAGGAATGAGGCAGGTTGGGCTTGATGTACGCAATGCAGCAAATGCTACAGAGAAGTTAGGTCCAAAAAAAATATTGCAGGAGCCAGACAAGAATCAATCTAAGGTGCTCAATTGTCATATACCACTTGCTTCTAGAGAGGTTACAGAGCCTCAGAAGGCTTCTGAAAAATGTTCCAAAGGAATGCAGACAGATAGCAGTAATTCTGTTTCATCTTCATTGTCTATTCAAGGATATGAACTTTCCGATGATGCAACAAATTTTATTGACATGAGAGAACAGACGCATTTTGATTATGAGAGCGCAACACATATTGAAACTATAAAGTCACTTCCAGACAAGAGTCATTATCAGTCACCCAATGGTCATATACCATGGGCTTCTGGAGAGATTACTGAGCCTCAGAAGGCTTCTGAAAAATGTTCCAAAGGAATGCCGCCAGATAGCAGTAATTCTGTTTCATCTTCAGTGTCTATACAAGGATTTGAACTTTCTGATGATGCGACAAATTTTATTGACATGAGAGAACAGACGCCTTCTGATCATGGGAGTGCCACACAGATTGAAACCATGAATTCACATCCAGACAGCAGGCCACCTGCTACCCATTTGCACCGTGAGATGGCTGAAACTATATCTAGGGAAGCCTCTCAACCCACCTTGAATCTTCAGAGTACAATTAATGATAATGAGAAAGGGAGTTCCGGTTTAACTGTTGATCACCATGCTCCAGATTCCAAGGAAATAATGGCTTCTGAAGATAGTTTCCACATCAATCAGACAAGTACTTCTGCTGCCACCTCGTGTGATAATAGATCTACAAGTCCCTCTGCTAGAGCCAGCAAAGAAATTAAAGATCTTCAGGATACTACTAAGCAAGTGACTTCAACCCATCCTCCGAAACTCCCACTATTGAGTGCTGGAGATAAGTTTGTTTGTGAAGAAGTCGCTCCAGTGAGCAAGCACAGTAATAGGTCTGACCCTGTTAGACAGCCAAAACCTGTGCTTGAGTCCACTGGTGATGACAAGGGCACTGTTAAGGAAATACTGTCATCTGCGGCTGAAACTGCTCCACCAATCACCTCTACCAATGACCAAAAAGGCTTGCAAGAAGATAAAGGAACCGTTTTGCTTAATCCAGTGATAGAAAGGCCAGCTGTTGGTAATCTTCCTCCAGCTTTTGATGATGTCATCCATGTTATACGGCATAGCAGTTACCGAGTTGGCAGTGAGCAACCAGTAAGGGAATCTGTGGAGATGGGAGTTCAAAACGTGGATGTTGGTAAATTTCTCAATGATGTAAGGGATGATTTAGAAATGAGAACCACGGGCACTCCTCTGACCCATAATTCTTCAAATTGCTCTGAGGCTGCGAGCTTGAAGTCAAACATTTCCGATCAATTAGACATGAGAAGCATGAGCACCGCTCCAGCTCTAAAGCCCTCGAGTTGCTCTGATGCTATGTGTACAAAGCCAAGCGTCTCTGGTCATTCCAGTGTCAAGGAACACGACGTGAAAATTCTTGTTCCTCCGGTCTCCAAATCCGATTCCCCTGAGTTGATTAAATGCAACTCTTCAGTGACCGGAGAGGAAACCCCAGCAAAGGAAACTTTGGATGTTAAATCATTTAGGCAGAGAGCAGATGCTCTTGAAGGTCTCTTGGAGTTGTCTGCAGAGTTACTGCAGCAAAATAGATTGGAGGAGCTTGCTGTTGTTCTAAAGCCCTTTGGGAAAGATATGGTATCCCCAAGAGAGACAGCCATTTGGTTGGCTAAGAGCTTAAAGGGAATGATGAACGACGACAATGGTGGACCTCAGAGGCACATACGACATCGTATTCAACATGAGCAACCCCAACAAGAAGATAGACATGTTCCCCAACAAGACGATCGCCATCATAAGGTGGAGCTCGCTCGGGGAACGGTGCAGGAGAAGGAGGCGATCTCGCTGGAGTCAACGGAGATGAAAGTGAAGGTTCAGGTAGTGATGAAGGCGGACTTAGCCAAGAAGAAGAAGGTATTTGCAGAAGTGGGGGACGGATGGAGGAGGAGGGTGGTGAACTTCAACGTGAGAATGGAAGCGAGTATTAGATTTGAAGCTGGGAATTGGCCACCAAAGTCGCAGCTTTTGAATCTCAACTGCGGTGACATGGATGTCGTCTAG 3759 0.4424 MESRMDQYEIMEQIGRGAFGAAILVHHKVEKKKYVLKKIRLARQTERCRRSAHQEMALIARVQHPYIVEFKEAWVEKGCYVCIVTGYCEGGDMAELMKKSNQVHFPEEVLWFYGSVVLAQKLCKWFTQLLLAVEYLHANFVLHRDLKCSNIFLTKDHDVRLGDFGLAKTLKADDLASSVVGTPNYMCPELLADIPYGFKSDIWSLGCCIYEMAAHRPAFKAFDMAGLISKINRSSIGPLPPCYSPSLKTLIKGMLRKNPEHRPTASEILKHPYLQSYVEQYHPSFSPPTSCSPEKPIPVTHDPRRNVAESQNSSSSSSDKYSLMSNDKIISTVVQKYNNKTTETDVTSIDDEDGSEHILPSEEDTSSSTSNAKADCQEVTKPSSNERQSIVESKPPKTIKNIMMALKEGKVRENGYPMRGNRIKAVGVSAQKNADALPKLPMSNAVAPGIKPNLESPTLTSAKTSPDPPKRMPRSHPLKNQALLMMDSSPKAKPRHDGTPPSGPIKQVEGDGISAKVRQGTPPSLLRQPSFRGGMRQVGLDVRNAANATEKLGPKKILQEPDKNQSKVLNCHIPLASREVTEPQKASEKCSKGMQTDSSNSVSSSLSIQGYELSDDATNFIDMREQTHFDYESATHIETIKSLPDKSHYQSPNGHIPWASGEITEPQKASEKCSKGMPPDSSNSVSSSVSIQGFELSDDATNFIDMREQTPSDHGSATQIETMNSHPDSRPPATHLHREMAETISREASQPTLNLQSTINDNEKGSSGLTVDHHAPDSKEIMASEDSFHINQTSTSAATSCDNRSTSPSARASKEIKDLQDTTKQVTSTHPPKLPLLSAGDKFVCEEVAPVSKHSNRSDPVRQPKPVLESTGDDKGTVKEILSSAAETAPPITSTNDQKGLQEDKGTVLLNPVIERPAVGNLPPAFDDVIHVIRHSSYRVGSEQPVRESVEMGVQNVDVGKFLNDVRDDLEMRTTGTPLTHNSSNCSEAASLKSNISDQLDMRSMSTAPALKPSSCSDAMCTKPSVSGHSSVKEHDVKILVPPVSKSDSPELIKCNSSVTGEETPAKETLDVKSFRQRADALEGLLELSAELLQQNRLEELAVVLKPFGKDMVSPRETAIWLAKSLKGMMNDDNGGPQRHIRHRIQHEQPQQEDRHVPQQDDRHHKVELARGTVQEKEAISLESTEMKVKVQVVMKADLAKKKKVFAEVGDGWRRRVVNFNVRMEASIRFEAGNWPPKSQLLNLNCGDMDVV 1252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0398 1252 MobiDBLite consensus disorder prediction 361 394 - -
Lele29g0398 1252 SUPERFAMILY Protein kinase-like (PK-like) 4 334 IPR011009 -
Lele29g0398 1252 MobiDBLite consensus disorder prediction 745 766 - -
Lele29g0398 1252 MobiDBLite consensus disorder prediction 284 322 - -
Lele29g0398 1252 CDD STKc_Nek 7 274 - -
Lele29g0398 1252 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Lele29g0398 1252 FunFam Serine/threonine-protein kinase Nek2 5 87 - -
Lele29g0398 1252 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 5 610 - -
Lele29g0398 1252 MobiDBLite consensus disorder prediction 793 876 - -
Lele29g0398 1252 MobiDBLite consensus disorder prediction 305 322 - -
Lele29g0398 1252 ProSitePatterns Protein kinases ATP-binding region signature. 14 37 IPR017441 GO:0005524
Lele29g0398 1252 SMART serkin_6 8 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele29g0398 1252 MobiDBLite consensus disorder prediction 708 729 - -
Lele29g0398 1252 MobiDBLite consensus disorder prediction 579 603 - -
Lele29g0398 1252 MobiDBLite consensus disorder prediction 343 394 - -
Lele29g0398 1252 Pfam Protein kinase domain 8 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele29g0398 1252 MobiDBLite consensus disorder prediction 793 813 - -
Lele29g0398 1252 MobiDBLite consensus disorder prediction 489 509 - -
Lele29g0398 1252 Gene3D Transferase(Phosphotransferase) domain 1 90 353 - -
Lele29g0398 1252 MobiDBLite consensus disorder prediction 588 603 - -
Lele29g0398 1252 MobiDBLite consensus disorder prediction 441 476 - -
Lele29g0398 1252 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Lele29g0398 1252 MobiDBLite consensus disorder prediction 643 687 - -
Lele29g0398 1252 ProSiteProfiles Protein kinase domain profile. 8 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele29g0398 1252 MobiDBLite consensus disorder prediction 708 774 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0398 Lele-ChrLele29 2400450 2408212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0398 14 276 MAP Kinase Kinase Kinase AT1G53570 30.970 9.56e-35 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Lele29g0398 Pkinase 1.2e-62 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0398 29 2400450 2408212 Lele31g1144 31 18075866 18082239 hybridization
Lele29g0398 29 2400450 2408212 Lele32g0377 32 2340454 2346891 hybridization