Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele29g0364 | ATGGAGATCGGATGGCCGACTAACGTGCGCCATGTTGCGCACGTCACATTTGATAGGTTCAATGGGTTCTTGGGTTTGCCGGACGAATTCGAACCTGAAGTGCCCAGAAGGCCTCCCAGCGCTAGTGCAACTGTTTTTGGAGTTTCAACAGAATCCATGCAGTTATCGTTTGACTCCAGAGGGAACAGTGTGCCAACTATTCTGTTATTAATGCAAAGACGCCTGTATAGTGAAGGAGGTTTGCAGGCAGAGGGAATATTCAGAATTAATGCAGACAATAGTCAAGAGGAACATGTTAGGGAGCAATTAAACAGGGGAGTAGTCCCTGAAAGCATTGATTTACATTGCTTAGCAGGACTTATCAAGGCTTGGTTTAGGGAACTACCAATGGGCGTTCTGGATTCCTTATCACCTGAGGAGGTAATGAAAAGCCAAACTGAGGAGGAGTGTGCTGAACTAGCAAGGAATCTACCTCCCACTGAAGCTTCCCTCTTTGACTGGGCAATCAATCTCATGGCTGACGTTGTCCAATATGAACATCTTAATAAGATGAATGCACGCAACGTTGCCATGGTTTTTGCCCCAAACATGACTCTGATGACCGACCCTTTGACTGCATTAATGTATGCAGTTCAAGTGATGAACTTCTTGAAGACACTGATACTAAGGACACTGCGGGAAAGAAAGGATTCTATAGTAGAATCTCCACCTGGTTTTTATTTAAAGCCCTCTGATGATAATAGTCACAATAGCCCTATACAGTTCTGCCAGCCAGATTCTGCTAAAGAAAATGAAGAGGCCCAGGCCCTCACAACTGAAAAAACTGTCTTAGAAACTGACCCTGCCCCTGATTCCCTCCAAGAGACTAACTTAAATGGAGCAGAATCTGGCAGTTTGGGAACCTCTTCTGATAACCGAGTATCTCATGAAGATTTGTATTGTGAGTATCCACCTAAAGGAAATGTTGGGAAGAACAAGACAGGGCAATCAAGCAATTCAAATTCAAGAAAGGGATCCAAGAAAACCAGAGACCAACAATCTTCGAACCAAGGGACAACGACTGTTGAGAAAACTAAGGGAACTGGTAAACTGAGTCGCATAAATTCAAGATCTGAGAAGGCAGAACCATGGCGGTGA | 1137 | 0.4433 | MEIGWPTNVRHVAHVTFDRFNGFLGLPDEFEPEVPRRPPSASATVFGVSTESMQLSFDSRGNSVPTILLLMQRRLYSEGGLQAEGIFRINADNSQEEHVREQLNRGVVPESIDLHCLAGLIKAWFRELPMGVLDSLSPEEVMKSQTEEECAELARNLPPTEASLFDWAINLMADVVQYEHLNKMNARNVAMVFAPNMTLMTDPLTALMYAVQVMNFLKTLILRTLRERKDSIVESPPGFYLKPSDDNSHNSPIQFCQPDSAKENEEAQALTTEKTVLETDPAPDSLQETNLNGAESGSLGTSSDNRVSHEDLYCEYPPKGNVGKNKTGQSSNSNSRKGSKKTRDQQSSNQGTTTVEKTKGTGKLSRINSRSEKAEPWR | 378 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele29g0364 | 378 | Gene3D | CRIB domain | 1 | 33 | IPR036936 | - | |
| Lele29g0364 | 378 | SMART | RhoGAP_3 | 62 | 225 | IPR000198 | GO:0007165 | |
| Lele29g0364 | 378 | CDD | RhoGAP | 65 | 221 | - | - | |
| Lele29g0364 | 378 | ProSiteProfiles | CRIB domain profile. | 3 | 16 | IPR000095 | - | |
| Lele29g0364 | 378 | ProSiteProfiles | Rho GTPase-activating proteins domain profile. | 48 | 233 | IPR000198 | GO:0007165 | |
| Lele29g0364 | 378 | MobiDBLite | consensus disorder prediction | 244 | 258 | - | - | |
| Lele29g0364 | 378 | SMART | PBD_5 | 3 | 37 | IPR000095 | - | |
| Lele29g0364 | 378 | Gene3D | Rho GTPase activation protein | 36 | 232 | IPR008936 | - | |
| Lele29g0364 | 378 | MobiDBLite | consensus disorder prediction | 282 | 307 | - | - | |
| Lele29g0364 | 378 | MobiDBLite | consensus disorder prediction | 344 | 365 | - | - | |
| Lele29g0364 | 378 | MobiDBLite | consensus disorder prediction | 234 | 378 | - | - | |
| Lele29g0364 | 378 | CDD | CRIB | 1 | 41 | - | - | |
| Lele29g0364 | 378 | SUPERFAMILY | GTPase activation domain, GAP | 43 | 222 | IPR008936 | - | |
| Lele29g0364 | 378 | Pfam | P21-Rho-binding domain | 2 | 29 | IPR000095 | - | |
| Lele29g0364 | 378 | FunFam | Rho GTPase-activating protein 5 | 33 | 226 | - | - | |
| Lele29g0364 | 378 | Pfam | RhoGAP domain | 65 | 198 | IPR000198 | GO:0007165 | |
| Lele29g0364 | 378 | PANTHER | MKIAA1688 PROTEIN | 1 | 347 | IPR044785 | GO:0005096 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele29g0364 | Lele-ChrLele29 | 2244563 | 2248432 | Dispersed/Wgd |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lele12g0260 | 12 | 2250237 | 2250788 | Lele29g0364 | 29 | 2244563 | 2248432 | CCT | |
| Lele29g0364 | 29 | 2244563 | 2248432 | Lele31g1175 | 31 | 18238990 | 18242628 | hybridization | |
| Lele29g0364 | 29 | 2244563 | 2248432 | Lele32g0353 | 32 | 2210295 | 2213253 | hybridization |